function [VOI, STATES, ALGEBRAIC, CONSTANTS] = mainFunction() % This is the "main function". In Matlab, things work best if you rename this function to match the filename. [VOI, STATES, ALGEBRAIC, CONSTANTS] = solveModel(); end function [algebraicVariableCount] = getAlgebraicVariableCount() % Used later when setting a global variable with the number of algebraic variables. % Note: This is not the "main method". algebraicVariableCount =124; end % There are a total of 19 entries in each of the rate and state variable arrays. % There are a total of 58 entries in the constant variable array. % function [VOI, STATES, ALGEBRAIC, CONSTANTS] = solveModel() % Create ALGEBRAIC of correct size global algebraicVariableCount; algebraicVariableCount = getAlgebraicVariableCount(); % Initialise constants and state variables [INIT_STATES, CONSTANTS] = initConsts; % Set timespan to solve over tspan = [0, 10]; % Set numerical accuracy options for ODE solver options = odeset('RelTol', 1e-06, 'AbsTol', 1e-06, 'MaxStep', 1); % Solve model with ODE solver [VOI, STATES] = ode15s(@(VOI, STATES)computeRates(VOI, STATES, CONSTANTS), tspan, INIT_STATES, options); % Compute algebraic variables [RATES, ALGEBRAIC] = computeRates(VOI, STATES, CONSTANTS); ALGEBRAIC = computeAlgebraic(ALGEBRAIC, CONSTANTS, STATES, VOI); % Plot state variables against variable of integration [LEGEND_STATES, LEGEND_ALGEBRAIC, LEGEND_VOI, LEGEND_CONSTANTS] = createLegends(); figure(); plot(VOI, STATES); xlabel(LEGEND_VOI); l = legend(LEGEND_STATES); set(l,'Interpreter','none'); end function [LEGEND_STATES, LEGEND_ALGEBRAIC, LEGEND_VOI, LEGEND_CONSTANTS] = createLegends() LEGEND_STATES = ''; LEGEND_ALGEBRAIC = ''; LEGEND_VOI = ''; LEGEND_CONSTANTS = ''; LEGEND_VOI = strpad('t in component environment (second)'); LEGEND_CONSTANTS(:,1) = strpad('R in component environment (J_per_K_per_mol)'); LEGEND_CONSTANTS(:,2) = strpad('T in component environment (kelvin)'); LEGEND_CONSTANTS(:,3) = strpad('F in component environment (C_per_mol)'); LEGEND_CONSTANTS(:,4) = strpad('C_m in component environment (fF)'); LEGEND_STATES(:,1) = strpad('q_Na_o in component environment (fmol)'); LEGEND_STATES(:,2) = strpad('q_Na_i in component environment (fmol)'); LEGEND_STATES(:,3) = strpad('q_S000_Na in component environment (fmol)'); LEGEND_STATES(:,4) = strpad('q_S010_Na in component environment (fmol)'); LEGEND_STATES(:,5) = strpad('q_S100_Na in component environment (fmol)'); LEGEND_STATES(:,6) = strpad('q_S110_Na in component environment (fmol)'); LEGEND_STATES(:,7) = strpad('q_S200_Na in component environment (fmol)'); LEGEND_STATES(:,8) = strpad('q_S210_Na in component environment (fmol)'); LEGEND_STATES(:,9) = strpad('q_S300_Na in component environment (fmol)'); LEGEND_STATES(:,10) = strpad('q_S310_Na in component environment (fmol)'); LEGEND_STATES(:,11) = strpad('q_S001_Na in component environment (fmol)'); LEGEND_STATES(:,12) = strpad('q_S011_Na in component environment (fmol)'); LEGEND_STATES(:,13) = strpad('q_S101_Na in component environment (fmol)'); LEGEND_STATES(:,14) = strpad('q_S111_Na in component environment (fmol)'); LEGEND_STATES(:,15) = strpad('q_S201_Na in component environment (fmol)'); LEGEND_STATES(:,16) = strpad('q_S211_Na in component environment (fmol)'); LEGEND_STATES(:,17) = strpad('q_S301_Na in component environment (fmol)'); LEGEND_STATES(:,18) = strpad('q_S311_Na in component environment (fmol)'); LEGEND_ALGEBRAIC(:,121) = strpad('v_Na in component fast_Na (fmol_per_sec)'); LEGEND_STATES(:,19) = strpad('q_mem in component environment (fC)'); LEGEND_ALGEBRAIC(:,123) = strpad('I_mem_Na in component fast_Na (fA)'); LEGEND_CONSTANTS(:,5) = strpad('K_000_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,6) = strpad('K_001_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,7) = strpad('K_010_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,8) = strpad('K_011_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,9) = strpad('K_100_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,10) = strpad('K_101_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,11) = strpad('K_110_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,12) = strpad('K_111_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,13) = strpad('K_200_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,14) = strpad('K_201_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,15) = strpad('K_210_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,16) = strpad('K_211_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,17) = strpad('K_300_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,18) = strpad('K_301_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,19) = strpad('K_310_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,20) = strpad('K_311_Na in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,21) = strpad('K_Na_o in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,22) = strpad('K_Na_i in component Na_parameters (per_fmol)'); LEGEND_CONSTANTS(:,23) = strpad('kappa_Na in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,24) = strpad('kappa_h000 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,25) = strpad('kappa_h001 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,26) = strpad('kappa_h100 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,27) = strpad('kappa_h101 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,28) = strpad('kappa_h200 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,29) = strpad('kappa_h201 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,30) = strpad('kappa_h300 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,31) = strpad('kappa_h301 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,32) = strpad('kappa_j000 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,33) = strpad('kappa_j010 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,34) = strpad('kappa_j100 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,35) = strpad('kappa_j110 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,36) = strpad('kappa_j200 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,37) = strpad('kappa_j210 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,38) = strpad('kappa_j300 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,39) = strpad('kappa_j310 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,40) = strpad('kappa_m000 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,41) = strpad('kappa_m001 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,42) = strpad('kappa_m010 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,43) = strpad('kappa_m011 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,44) = strpad('kappa_m100 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,45) = strpad('kappa_m101 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,46) = strpad('kappa_m110 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,47) = strpad('kappa_m111 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,48) = strpad('kappa_m200 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,49) = strpad('kappa_m201 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,50) = strpad('kappa_m210 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,51) = strpad('kappa_m211 in component Na_parameters (fmol_per_sec)'); LEGEND_CONSTANTS(:,52) = strpad('zNa in component Na_parameters (dimensionless)'); LEGEND_CONSTANTS(:,53) = strpad('z_fh in component Na_parameters (dimensionless)'); LEGEND_CONSTANTS(:,54) = strpad('z_fj in component Na_parameters (dimensionless)'); LEGEND_CONSTANTS(:,55) = strpad('z_fm in component Na_parameters (dimensionless)'); LEGEND_CONSTANTS(:,56) = strpad('z_rh in component Na_parameters (dimensionless)'); LEGEND_CONSTANTS(:,57) = strpad('z_rj in component Na_parameters (dimensionless)'); LEGEND_CONSTANTS(:,58) = strpad('z_rm in component Na_parameters (dimensionless)'); LEGEND_ALGEBRAIC(:,17) = strpad('mu_Na_o in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,18) = strpad('mu_Na_i in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,2) = strpad('mu_S000_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,3) = strpad('mu_S010_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,4) = strpad('mu_S100_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,5) = strpad('mu_S110_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,6) = strpad('mu_S200_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,7) = strpad('mu_S210_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,8) = strpad('mu_S300_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,9) = strpad('mu_S310_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,10) = strpad('mu_S001_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,11) = strpad('mu_S011_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,12) = strpad('mu_S101_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,13) = strpad('mu_S111_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,14) = strpad('mu_S201_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,15) = strpad('mu_S211_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,16) = strpad('mu_S301_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,19) = strpad('mu_S311_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,49) = strpad('Am_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,20) = strpad('Af_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,50) = strpad('Ar_Na in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,21) = strpad('Af_h000 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,51) = strpad('Ar_h000 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,52) = strpad('v_h000 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,22) = strpad('Af_h001 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,53) = strpad('Ar_h001 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,54) = strpad('v_h001 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,23) = strpad('Af_h100 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,55) = strpad('Ar_h100 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,56) = strpad('v_h100 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,24) = strpad('Af_h101 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,57) = strpad('Ar_h101 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,58) = strpad('v_h101 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,25) = strpad('Af_h200 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,59) = strpad('Ar_h200 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,60) = strpad('v_h200 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,26) = strpad('Af_h201 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,61) = strpad('Ar_h201 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,62) = strpad('v_h201 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,27) = strpad('Af_h300 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,63) = strpad('Ar_h300 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,64) = strpad('v_h300 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,28) = strpad('Af_h301 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,65) = strpad('Ar_h301 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,66) = strpad('v_h301 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,29) = strpad('Af_j000 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,67) = strpad('Ar_j000 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,68) = strpad('v_j000 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,30) = strpad('Af_j010 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,69) = strpad('Ar_j010 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,70) = strpad('v_j010 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,31) = strpad('Af_j100 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,71) = strpad('Ar_j100 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,72) = strpad('v_j100 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,32) = strpad('Af_j110 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,73) = strpad('Ar_j110 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,74) = strpad('v_j110 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,33) = strpad('Af_j200 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,75) = strpad('Ar_j200 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,76) = strpad('v_j200 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,34) = strpad('Af_j210 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,77) = strpad('Ar_j210 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,78) = strpad('v_j210 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,35) = strpad('Af_j300 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,79) = strpad('Ar_j300 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,80) = strpad('v_j300 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,36) = strpad('Af_j310 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,81) = strpad('Ar_j310 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,82) = strpad('v_j310 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,37) = strpad('Af_m000 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,83) = strpad('Ar_m000 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,84) = strpad('v_m000 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,38) = strpad('Af_m001 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,85) = strpad('Ar_m001 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,87) = strpad('v_m001 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,39) = strpad('Af_m010 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,88) = strpad('Ar_m010 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,90) = strpad('v_m010 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,40) = strpad('Af_m011 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,91) = strpad('Ar_m011 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,93) = strpad('v_m011 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,41) = strpad('Af_m100 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,94) = strpad('Ar_m100 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,96) = strpad('v_m100 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,42) = strpad('Af_m101 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,97) = strpad('Ar_m101 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,99) = strpad('v_m101 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,43) = strpad('Af_m110 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,100) = strpad('Ar_m110 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,102) = strpad('v_m110 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,44) = strpad('Af_m111 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,103) = strpad('Ar_m111 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,105) = strpad('v_m111 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,45) = strpad('Af_m200 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,106) = strpad('Ar_m200 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,108) = strpad('v_m200 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,46) = strpad('Af_m201 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,109) = strpad('Ar_m201 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,112) = strpad('v_m201 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,47) = strpad('Af_m210 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,113) = strpad('Ar_m210 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,116) = strpad('v_m210 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,48) = strpad('Af_m211 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,117) = strpad('Ar_m211 in component fast_Na (J_per_mol)'); LEGEND_ALGEBRAIC(:,120) = strpad('v_m211 in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,86) = strpad('v_S000_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,92) = strpad('v_S010_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,98) = strpad('v_S100_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,104) = strpad('v_S110_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,110) = strpad('v_S200_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,118) = strpad('v_S210_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,111) = strpad('v_S300_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,119) = strpad('v_S310_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,89) = strpad('v_S001_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,95) = strpad('v_S011_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,101) = strpad('v_S101_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,107) = strpad('v_S111_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,114) = strpad('v_S201_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,122) = strpad('v_S211_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,115) = strpad('v_S301_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,124) = strpad('v_S311_Na in component fast_Na (fmol_per_sec)'); LEGEND_ALGEBRAIC(:,1) = strpad('V_mem in component fast_Na (volt)'); LEGEND_RATES(:,1) = strpad('d/dt q_Na_o in component environment (fmol)'); LEGEND_RATES(:,2) = strpad('d/dt q_Na_i in component environment (fmol)'); LEGEND_RATES(:,19) = strpad('d/dt q_mem in component environment (fC)'); LEGEND_RATES(:,3) = strpad('d/dt q_S000_Na in component environment (fmol)'); LEGEND_RATES(:,4) = strpad('d/dt q_S010_Na in component environment (fmol)'); LEGEND_RATES(:,5) = strpad('d/dt q_S100_Na in component environment (fmol)'); LEGEND_RATES(:,6) = strpad('d/dt q_S110_Na in component environment (fmol)'); LEGEND_RATES(:,7) = strpad('d/dt q_S200_Na in component environment (fmol)'); LEGEND_RATES(:,8) = strpad('d/dt q_S210_Na in component environment (fmol)'); LEGEND_RATES(:,9) = strpad('d/dt q_S300_Na in component environment (fmol)'); LEGEND_RATES(:,10) = strpad('d/dt q_S310_Na in component environment (fmol)'); LEGEND_RATES(:,11) = strpad('d/dt q_S001_Na in component environment (fmol)'); LEGEND_RATES(:,12) = strpad('d/dt q_S011_Na in component environment (fmol)'); LEGEND_RATES(:,13) = strpad('d/dt q_S101_Na in component environment (fmol)'); LEGEND_RATES(:,14) = strpad('d/dt q_S111_Na in component environment (fmol)'); LEGEND_RATES(:,15) = strpad('d/dt q_S201_Na in component environment (fmol)'); LEGEND_RATES(:,16) = strpad('d/dt q_S211_Na in component environment (fmol)'); LEGEND_RATES(:,17) = strpad('d/dt q_S301_Na in component environment (fmol)'); LEGEND_RATES(:,18) = strpad('d/dt q_S311_Na in component environment (fmol)'); LEGEND_STATES = LEGEND_STATES'; LEGEND_ALGEBRAIC = LEGEND_ALGEBRAIC'; LEGEND_RATES = LEGEND_RATES'; LEGEND_CONSTANTS = LEGEND_CONSTANTS'; end function [STATES, CONSTANTS] = initConsts() VOI = 0; CONSTANTS = []; STATES = []; ALGEBRAIC = []; CONSTANTS(:,1) = 8.314; CONSTANTS(:,2) = 310; CONSTANTS(:,3) = 96485; CONSTANTS(:,4) = 153400; STATES(:,1) = 725.48; STATES(:,2) = 380; STATES(:,3) = 1.72572E-05; STATES(:,4) = 1.91747E-06; STATES(:,5) = 5.75256E-06; STATES(:,6) = 6.39176E-07; STATES(:,7) = 6.39176E-07; STATES(:,8) = 7.10196E-08; STATES(:,9) = 2.36737E-08; STATES(:,10) = 2.63039E-09; STATES(:,11) = 1.91747E-06; STATES(:,12) = 2.13059E-07; STATES(:,13) = 6.39176E-07; STATES(:,14) = 7.10196E-08; STATES(:,15) = 7.10196E-08; STATES(:,16) = 7.89103E-09; STATES(:,17) = 2.63039E-09; STATES(:,18) = 2.92267E-10; STATES(:,19) = -13039; CONSTANTS(:,5) = 0.0073376; CONSTANTS(:,6) = 23718.0222; CONSTANTS(:,7) = 17499.8767; CONSTANTS(:,8) = 56566767727.4036; CONSTANTS(:,9) = 1.5633e-05; CONSTANTS(:,10) = 50.5317; CONSTANTS(:,11) = 37.2839; CONSTANTS(:,12) = 120516694.0958; CONSTANTS(:,13) = 9.9918e-08; CONSTANTS(:,14) = 0.32298; CONSTANTS(:,15) = 0.2383; CONSTANTS(:,16) = 770290.0911; CONSTANTS(:,17) = 1.9159e-09; CONSTANTS(:,18) = 0.006193; CONSTANTS(:,19) = 0.0045694; CONSTANTS(:,20) = 14770.0739; CONSTANTS(:,21) = 0.017678; CONSTANTS(:,22) = 0.0024108; CONSTANTS(:,23) = 32.858; CONSTANTS(:,24) = 0.045709; CONSTANTS(:,25) = 1.4141e-08; CONSTANTS(:,26) = 21.4544; CONSTANTS(:,27) = 6.6373e-06; CONSTANTS(:,28) = 3356.675; CONSTANTS(:,29) = 0.0010384; CONSTANTS(:,30) = 175057.5863; CONSTANTS(:,31) = 0.054157; CONSTANTS(:,32) = 0.017824; CONSTANTS(:,33) = 7.4736e-09; CONSTANTS(:,34) = 8.3662; CONSTANTS(:,35) = 3.5079e-06; CONSTANTS(:,36) = 1308.9427; CONSTANTS(:,37) = 0.00054883; CONSTANTS(:,38) = 68264.0876; CONSTANTS(:,39) = 0.028623; CONSTANTS(:,40) = 5117405.6443; CONSTANTS(:,41) = 1.5832; CONSTANTS(:,42) = 2.1457; CONSTANTS(:,43) = 6.6381e-07; CONSTANTS(:,44) = 1601300127.6001; CONSTANTS(:,45) = 495.389; CONSTANTS(:,46) = 671.4132; CONSTANTS(:,47) = 0.00020771; CONSTANTS(:,48) = 125266701374.7363; CONSTANTS(:,49) = 38753.3515; CONSTANTS(:,50) = 52523.3901; CONSTANTS(:,51) = 0.016249; CONSTANTS(:,52) = 1; CONSTANTS(:,53) = -4.1892; CONSTANTS(:,54) = -4.0381; CONSTANTS(:,55) = 0.49541; CONSTANTS(:,56) = 1.2995; CONSTANTS(:,57) = 1.4281; CONSTANTS(:,58) = -2.4284; if (isempty(STATES)), warning('Initial values for states not set');, end end function [RATES, ALGEBRAIC] = computeRates(VOI, STATES, CONSTANTS) global algebraicVariableCount; statesSize = size(STATES); statesColumnCount = statesSize(2); if ( statesColumnCount == 1) STATES = STATES'; ALGEBRAIC = zeros(1, algebraicVariableCount); utilOnes = 1; else statesRowCount = statesSize(1); ALGEBRAIC = zeros(statesRowCount, algebraicVariableCount); RATES = zeros(statesRowCount, statesColumnCount); utilOnes = ones(statesRowCount, 1); end ALGEBRAIC(:,1) = STATES(:,19)./CONSTANTS(:,4); ALGEBRAIC(:,21) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,5).*STATES(:,3))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,51) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,7).*STATES(:,4))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,52) = CONSTANTS(:,24).*(exp(ALGEBRAIC(:,21)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,51)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,29) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,5).*STATES(:,3))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,67) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,6).*STATES(:,11))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,68) = CONSTANTS(:,32).*(exp(ALGEBRAIC(:,29)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,67)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,37) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,5).*STATES(:,3))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,83) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,9).*STATES(:,5))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,84) = CONSTANTS(:,40).*(exp(ALGEBRAIC(:,37)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,83)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,86) = ( - ALGEBRAIC(:,84) - ALGEBRAIC(:,52)) - ALGEBRAIC(:,68); RATES(:,3) = ALGEBRAIC(:,86); ALGEBRAIC(:,22) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,6).*STATES(:,11))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,53) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,8).*STATES(:,12))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,54) = CONSTANTS(:,25).*(exp(ALGEBRAIC(:,22)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,53)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,38) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,6).*STATES(:,11))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,85) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,10).*STATES(:,13))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,87) = CONSTANTS(:,41).*(exp(ALGEBRAIC(:,38)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,85)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,89) = ( - ALGEBRAIC(:,87) - ALGEBRAIC(:,54)) - - ALGEBRAIC(:,68); RATES(:,11) = ALGEBRAIC(:,89); ALGEBRAIC(:,30) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,7).*STATES(:,4))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,69) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,8).*STATES(:,12))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,70) = CONSTANTS(:,33).*(exp(ALGEBRAIC(:,30)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,69)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,39) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,7).*STATES(:,4))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,88) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,11).*STATES(:,6))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,90) = CONSTANTS(:,42).*(exp(ALGEBRAIC(:,39)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,88)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,92) = ( - ALGEBRAIC(:,90)+ALGEBRAIC(:,52)) - ALGEBRAIC(:,70); RATES(:,4) = ALGEBRAIC(:,92); ALGEBRAIC(:,40) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,8).*STATES(:,12))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,91) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,12).*STATES(:,14))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,93) = CONSTANTS(:,43).*(exp(ALGEBRAIC(:,40)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,91)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,95) = ( - ALGEBRAIC(:,93)+ALGEBRAIC(:,54)) - - ALGEBRAIC(:,70); RATES(:,12) = ALGEBRAIC(:,95); ALGEBRAIC(:,23) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,9).*STATES(:,5))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,55) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,11).*STATES(:,6))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,56) = CONSTANTS(:,26).*(exp(ALGEBRAIC(:,23)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,55)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,31) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,9).*STATES(:,5))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,71) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,10).*STATES(:,13))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,72) = CONSTANTS(:,34).*(exp(ALGEBRAIC(:,31)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,71)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,41) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,9).*STATES(:,5))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,94) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,13).*STATES(:,7))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,96) = CONSTANTS(:,44).*(exp(ALGEBRAIC(:,41)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,94)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,98) = ((ALGEBRAIC(:,84) - ALGEBRAIC(:,96)) - ALGEBRAIC(:,56)) - ALGEBRAIC(:,72); RATES(:,5) = ALGEBRAIC(:,98); ALGEBRAIC(:,24) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,10).*STATES(:,13))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,57) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,12).*STATES(:,14))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,58) = CONSTANTS(:,27).*(exp(ALGEBRAIC(:,24)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,57)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,42) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,10).*STATES(:,13))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,97) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,14).*STATES(:,15))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,99) = CONSTANTS(:,45).*(exp(ALGEBRAIC(:,42)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,97)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,101) = ((ALGEBRAIC(:,87) - ALGEBRAIC(:,99)) - ALGEBRAIC(:,58)) - - ALGEBRAIC(:,72); RATES(:,13) = ALGEBRAIC(:,101); ALGEBRAIC(:,32) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,11).*STATES(:,6))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,73) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,12).*STATES(:,14))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,74) = CONSTANTS(:,35).*(exp(ALGEBRAIC(:,32)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,73)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,43) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,11).*STATES(:,6))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,100) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,15).*STATES(:,8))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,102) = CONSTANTS(:,46).*(exp(ALGEBRAIC(:,43)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,100)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,104) = ((ALGEBRAIC(:,90) - ALGEBRAIC(:,102))+ALGEBRAIC(:,56)) - ALGEBRAIC(:,74); RATES(:,6) = ALGEBRAIC(:,104); ALGEBRAIC(:,44) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,12).*STATES(:,14))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,103) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,16).*STATES(:,16))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,105) = CONSTANTS(:,47).*(exp(ALGEBRAIC(:,44)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,103)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,107) = ((ALGEBRAIC(:,93) - ALGEBRAIC(:,105))+ALGEBRAIC(:,58)) - - ALGEBRAIC(:,74); RATES(:,14) = ALGEBRAIC(:,107); ALGEBRAIC(:,25) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,13).*STATES(:,7))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,59) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,15).*STATES(:,8))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,60) = CONSTANTS(:,28).*(exp(ALGEBRAIC(:,25)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,59)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,33) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,13).*STATES(:,7))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,75) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,14).*STATES(:,15))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,76) = CONSTANTS(:,36).*(exp(ALGEBRAIC(:,33)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,75)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,45) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,13).*STATES(:,7))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,106) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,17).*STATES(:,9))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,108) = CONSTANTS(:,48).*(exp(ALGEBRAIC(:,45)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,106)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,110) = ((ALGEBRAIC(:,96) - ALGEBRAIC(:,108)) - ALGEBRAIC(:,60)) - ALGEBRAIC(:,76); RATES(:,7) = ALGEBRAIC(:,110); ALGEBRAIC(:,27) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,17).*STATES(:,9))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,63) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,19).*STATES(:,10))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,64) = CONSTANTS(:,30).*(exp(ALGEBRAIC(:,27)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,63)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,35) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,17).*STATES(:,9))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,79) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,18).*STATES(:,17))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,80) = CONSTANTS(:,38).*(exp(ALGEBRAIC(:,35)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,79)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,111) = (ALGEBRAIC(:,108) - ALGEBRAIC(:,64)) - ALGEBRAIC(:,80); RATES(:,9) = ALGEBRAIC(:,111); ALGEBRAIC(:,26) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,14).*STATES(:,15))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,61) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,16).*STATES(:,16))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,62) = CONSTANTS(:,29).*(exp(ALGEBRAIC(:,26)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,61)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,46) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,14).*STATES(:,15))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,109) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,18).*STATES(:,17))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,112) = CONSTANTS(:,49).*(exp(ALGEBRAIC(:,46)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,109)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,114) = ((ALGEBRAIC(:,99) - ALGEBRAIC(:,112)) - ALGEBRAIC(:,62)) - - ALGEBRAIC(:,76); RATES(:,15) = ALGEBRAIC(:,114); ALGEBRAIC(:,28) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,18).*STATES(:,17))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,65) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,20).*STATES(:,18))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,66) = CONSTANTS(:,31).*(exp(ALGEBRAIC(:,28)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,65)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,115) = (ALGEBRAIC(:,112) - ALGEBRAIC(:,66)) - - ALGEBRAIC(:,80); RATES(:,17) = ALGEBRAIC(:,115); ALGEBRAIC(:,34) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,15).*STATES(:,8))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,77) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,16).*STATES(:,16))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,78) = CONSTANTS(:,37).*(exp(ALGEBRAIC(:,34)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,77)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,47) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,15).*STATES(:,8))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,113) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,19).*STATES(:,10))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,116) = CONSTANTS(:,50).*(exp(ALGEBRAIC(:,47)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,113)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,118) = ((ALGEBRAIC(:,102) - ALGEBRAIC(:,116))+ALGEBRAIC(:,60)) - ALGEBRAIC(:,78); RATES(:,8) = ALGEBRAIC(:,118); ALGEBRAIC(:,36) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,19).*STATES(:,10))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,81) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,20).*STATES(:,18))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,82) = CONSTANTS(:,39).*(exp(ALGEBRAIC(:,36)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,81)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,119) = (ALGEBRAIC(:,116)+ALGEBRAIC(:,64)) - ALGEBRAIC(:,82); RATES(:,10) = ALGEBRAIC(:,119); ALGEBRAIC(:,49) = CONSTANTS(:,52).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,18) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,22).*STATES(:,2)); ALGEBRAIC(:,19) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,20).*STATES(:,18)); ALGEBRAIC(:,20) = ALGEBRAIC(:,18)+ CONSTANTS(:,52).*CONSTANTS(:,3).*ALGEBRAIC(:,1)+ALGEBRAIC(:,19); ALGEBRAIC(:,17) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,21).*STATES(:,1)); ALGEBRAIC(:,50) = ALGEBRAIC(:,17)+ALGEBRAIC(:,19); ALGEBRAIC(:,121) = piecewise({ALGEBRAIC(:,49)==0.00000, CONSTANTS(:,23).*(exp(ALGEBRAIC(:,20)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,50)./( CONSTANTS(:,1).*CONSTANTS(:,2)))) }, ((( CONSTANTS(:,23).*ALGEBRAIC(:,49))./( CONSTANTS(:,1).*CONSTANTS(:,2)))./(exp(ALGEBRAIC(:,49)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - 1.00000)).*(exp(ALGEBRAIC(:,20)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,50)./( CONSTANTS(:,1).*CONSTANTS(:,2))))); RATES(:,1) = ALGEBRAIC(:,121); RATES(:,2) = - ALGEBRAIC(:,121); ALGEBRAIC(:,48) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,16).*STATES(:,16))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,117) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,20).*STATES(:,18))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,120) = CONSTANTS(:,51).*(exp(ALGEBRAIC(:,48)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,117)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,122) = ((ALGEBRAIC(:,105) - ALGEBRAIC(:,120))+ALGEBRAIC(:,62)) - - ALGEBRAIC(:,78); RATES(:,16) = ALGEBRAIC(:,122); ALGEBRAIC(:,123) = CONSTANTS(:,3).*(((((((((((((((((((((((((((((((((((((((((((((((((((((((( - CONSTANTS(:,52).*ALGEBRAIC(:,121)+ CONSTANTS(:,58).*ALGEBRAIC(:,84)) - CONSTANTS(:,55).*ALGEBRAIC(:,84))+ CONSTANTS(:,58).*ALGEBRAIC(:,96)) - CONSTANTS(:,55).*ALGEBRAIC(:,96))+ CONSTANTS(:,58).*ALGEBRAIC(:,90)) - CONSTANTS(:,55).*ALGEBRAIC(:,90))+ CONSTANTS(:,58).*ALGEBRAIC(:,102)) - CONSTANTS(:,55).*ALGEBRAIC(:,102))+ CONSTANTS(:,58).*ALGEBRAIC(:,116)) - CONSTANTS(:,55).*ALGEBRAIC(:,116))+ CONSTANTS(:,56).*ALGEBRAIC(:,52)) - CONSTANTS(:,53).*ALGEBRAIC(:,52))+ CONSTANTS(:,56).*ALGEBRAIC(:,60)) - CONSTANTS(:,53).*ALGEBRAIC(:,60))+ CONSTANTS(:,57).*ALGEBRAIC(:,72)) - CONSTANTS(:,54).*ALGEBRAIC(:,72))+ CONSTANTS(:,57).*ALGEBRAIC(:,76)) - CONSTANTS(:,54).*ALGEBRAIC(:,76))+ CONSTANTS(:,57).*ALGEBRAIC(:,80)) - CONSTANTS(:,54).*ALGEBRAIC(:,80))+ CONSTANTS(:,58).*ALGEBRAIC(:,108)) - CONSTANTS(:,55).*ALGEBRAIC(:,108))+ CONSTANTS(:,56).*ALGEBRAIC(:,56)) - CONSTANTS(:,53).*ALGEBRAIC(:,56))+ CONSTANTS(:,56).*ALGEBRAIC(:,64)) - CONSTANTS(:,53).*ALGEBRAIC(:,64))+ CONSTANTS(:,57).*ALGEBRAIC(:,68)) - CONSTANTS(:,54).*ALGEBRAIC(:,68))+ CONSTANTS(:,58).*ALGEBRAIC(:,87)) - CONSTANTS(:,55).*ALGEBRAIC(:,87))+ CONSTANTS(:,58).*ALGEBRAIC(:,99)) - CONSTANTS(:,55).*ALGEBRAIC(:,99))+ CONSTANTS(:,58).*ALGEBRAIC(:,93)) - CONSTANTS(:,55).*ALGEBRAIC(:,93))+ CONSTANTS(:,58).*ALGEBRAIC(:,105)) - CONSTANTS(:,55).*ALGEBRAIC(:,105))+ CONSTANTS(:,58).*ALGEBRAIC(:,120)) - CONSTANTS(:,55).*ALGEBRAIC(:,120))+ CONSTANTS(:,56).*ALGEBRAIC(:,54)) - CONSTANTS(:,53).*ALGEBRAIC(:,54))+ CONSTANTS(:,56).*ALGEBRAIC(:,62)) - CONSTANTS(:,53).*ALGEBRAIC(:,62))+ CONSTANTS(:,57).*ALGEBRAIC(:,70)) - CONSTANTS(:,54).*ALGEBRAIC(:,70))+ CONSTANTS(:,57).*ALGEBRAIC(:,74)) - CONSTANTS(:,54).*ALGEBRAIC(:,74))+ CONSTANTS(:,57).*ALGEBRAIC(:,78)) - CONSTANTS(:,54).*ALGEBRAIC(:,78))+ CONSTANTS(:,57).*ALGEBRAIC(:,82)) - CONSTANTS(:,54).*ALGEBRAIC(:,82))+ CONSTANTS(:,58).*ALGEBRAIC(:,112)) - CONSTANTS(:,55).*ALGEBRAIC(:,112))+ CONSTANTS(:,56).*ALGEBRAIC(:,58)) - CONSTANTS(:,53).*ALGEBRAIC(:,58))+ CONSTANTS(:,56).*ALGEBRAIC(:,66)) - CONSTANTS(:,53).*ALGEBRAIC(:,66)); RATES(:,19) = ALGEBRAIC(:,123); ALGEBRAIC(:,124) = (ALGEBRAIC(:,120)+ALGEBRAIC(:,66)) - (( - ALGEBRAIC(:,82)+ALGEBRAIC(:,121)) - ALGEBRAIC(:,121)); RATES(:,18) = ALGEBRAIC(:,124); RATES = RATES'; end % Calculate algebraic variables function ALGEBRAIC = computeAlgebraic(ALGEBRAIC, CONSTANTS, STATES, VOI) statesSize = size(STATES); statesColumnCount = statesSize(2); if ( statesColumnCount == 1) STATES = STATES'; utilOnes = 1; else statesRowCount = statesSize(1); utilOnes = ones(statesRowCount, 1); end ALGEBRAIC(:,1) = STATES(:,19)./CONSTANTS(:,4); ALGEBRAIC(:,21) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,5).*STATES(:,3))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,51) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,7).*STATES(:,4))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,52) = CONSTANTS(:,24).*(exp(ALGEBRAIC(:,21)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,51)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,29) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,5).*STATES(:,3))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,67) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,6).*STATES(:,11))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,68) = CONSTANTS(:,32).*(exp(ALGEBRAIC(:,29)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,67)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,37) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,5).*STATES(:,3))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,83) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,9).*STATES(:,5))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,84) = CONSTANTS(:,40).*(exp(ALGEBRAIC(:,37)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,83)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,86) = ( - ALGEBRAIC(:,84) - ALGEBRAIC(:,52)) - ALGEBRAIC(:,68); ALGEBRAIC(:,22) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,6).*STATES(:,11))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,53) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,8).*STATES(:,12))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,54) = CONSTANTS(:,25).*(exp(ALGEBRAIC(:,22)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,53)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,38) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,6).*STATES(:,11))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,85) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,10).*STATES(:,13))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,87) = CONSTANTS(:,41).*(exp(ALGEBRAIC(:,38)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,85)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,89) = ( - ALGEBRAIC(:,87) - ALGEBRAIC(:,54)) - - ALGEBRAIC(:,68); ALGEBRAIC(:,30) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,7).*STATES(:,4))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,69) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,8).*STATES(:,12))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,70) = CONSTANTS(:,33).*(exp(ALGEBRAIC(:,30)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,69)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,39) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,7).*STATES(:,4))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,88) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,11).*STATES(:,6))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,90) = CONSTANTS(:,42).*(exp(ALGEBRAIC(:,39)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,88)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,92) = ( - ALGEBRAIC(:,90)+ALGEBRAIC(:,52)) - ALGEBRAIC(:,70); ALGEBRAIC(:,40) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,8).*STATES(:,12))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,91) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,12).*STATES(:,14))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,93) = CONSTANTS(:,43).*(exp(ALGEBRAIC(:,40)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,91)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,95) = ( - ALGEBRAIC(:,93)+ALGEBRAIC(:,54)) - - ALGEBRAIC(:,70); ALGEBRAIC(:,23) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,9).*STATES(:,5))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,55) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,11).*STATES(:,6))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,56) = CONSTANTS(:,26).*(exp(ALGEBRAIC(:,23)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,55)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,31) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,9).*STATES(:,5))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,71) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,10).*STATES(:,13))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,72) = CONSTANTS(:,34).*(exp(ALGEBRAIC(:,31)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,71)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,41) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,9).*STATES(:,5))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,94) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,13).*STATES(:,7))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,96) = CONSTANTS(:,44).*(exp(ALGEBRAIC(:,41)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,94)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,98) = ((ALGEBRAIC(:,84) - ALGEBRAIC(:,96)) - ALGEBRAIC(:,56)) - ALGEBRAIC(:,72); ALGEBRAIC(:,24) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,10).*STATES(:,13))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,57) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,12).*STATES(:,14))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,58) = CONSTANTS(:,27).*(exp(ALGEBRAIC(:,24)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,57)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,42) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,10).*STATES(:,13))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,97) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,14).*STATES(:,15))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,99) = CONSTANTS(:,45).*(exp(ALGEBRAIC(:,42)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,97)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,101) = ((ALGEBRAIC(:,87) - ALGEBRAIC(:,99)) - ALGEBRAIC(:,58)) - - ALGEBRAIC(:,72); ALGEBRAIC(:,32) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,11).*STATES(:,6))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,73) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,12).*STATES(:,14))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,74) = CONSTANTS(:,35).*(exp(ALGEBRAIC(:,32)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,73)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,43) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,11).*STATES(:,6))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,100) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,15).*STATES(:,8))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,102) = CONSTANTS(:,46).*(exp(ALGEBRAIC(:,43)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,100)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,104) = ((ALGEBRAIC(:,90) - ALGEBRAIC(:,102))+ALGEBRAIC(:,56)) - ALGEBRAIC(:,74); ALGEBRAIC(:,44) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,12).*STATES(:,14))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,103) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,16).*STATES(:,16))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,105) = CONSTANTS(:,47).*(exp(ALGEBRAIC(:,44)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,103)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,107) = ((ALGEBRAIC(:,93) - ALGEBRAIC(:,105))+ALGEBRAIC(:,58)) - - ALGEBRAIC(:,74); ALGEBRAIC(:,25) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,13).*STATES(:,7))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,59) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,15).*STATES(:,8))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,60) = CONSTANTS(:,28).*(exp(ALGEBRAIC(:,25)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,59)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,33) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,13).*STATES(:,7))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,75) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,14).*STATES(:,15))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,76) = CONSTANTS(:,36).*(exp(ALGEBRAIC(:,33)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,75)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,45) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,13).*STATES(:,7))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,106) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,17).*STATES(:,9))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,108) = CONSTANTS(:,48).*(exp(ALGEBRAIC(:,45)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,106)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,110) = ((ALGEBRAIC(:,96) - ALGEBRAIC(:,108)) - ALGEBRAIC(:,60)) - ALGEBRAIC(:,76); ALGEBRAIC(:,27) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,17).*STATES(:,9))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,63) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,19).*STATES(:,10))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,64) = CONSTANTS(:,30).*(exp(ALGEBRAIC(:,27)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,63)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,35) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,17).*STATES(:,9))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,79) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,18).*STATES(:,17))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,80) = CONSTANTS(:,38).*(exp(ALGEBRAIC(:,35)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,79)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,111) = (ALGEBRAIC(:,108) - ALGEBRAIC(:,64)) - ALGEBRAIC(:,80); ALGEBRAIC(:,26) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,14).*STATES(:,15))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,61) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,16).*STATES(:,16))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,62) = CONSTANTS(:,29).*(exp(ALGEBRAIC(:,26)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,61)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,46) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,14).*STATES(:,15))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,109) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,18).*STATES(:,17))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,112) = CONSTANTS(:,49).*(exp(ALGEBRAIC(:,46)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,109)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,114) = ((ALGEBRAIC(:,99) - ALGEBRAIC(:,112)) - ALGEBRAIC(:,62)) - - ALGEBRAIC(:,76); ALGEBRAIC(:,28) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,18).*STATES(:,17))+ CONSTANTS(:,53).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,65) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,20).*STATES(:,18))+ CONSTANTS(:,56).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,66) = CONSTANTS(:,31).*(exp(ALGEBRAIC(:,28)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,65)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,115) = (ALGEBRAIC(:,112) - ALGEBRAIC(:,66)) - - ALGEBRAIC(:,80); ALGEBRAIC(:,34) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,15).*STATES(:,8))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,77) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,16).*STATES(:,16))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,78) = CONSTANTS(:,37).*(exp(ALGEBRAIC(:,34)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,77)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,47) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,15).*STATES(:,8))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,113) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,19).*STATES(:,10))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,116) = CONSTANTS(:,50).*(exp(ALGEBRAIC(:,47)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,113)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,118) = ((ALGEBRAIC(:,102) - ALGEBRAIC(:,116))+ALGEBRAIC(:,60)) - ALGEBRAIC(:,78); ALGEBRAIC(:,36) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,19).*STATES(:,10))+ CONSTANTS(:,54).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,81) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,20).*STATES(:,18))+ CONSTANTS(:,57).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,82) = CONSTANTS(:,39).*(exp(ALGEBRAIC(:,36)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,81)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,119) = (ALGEBRAIC(:,116)+ALGEBRAIC(:,64)) - ALGEBRAIC(:,82); ALGEBRAIC(:,49) = CONSTANTS(:,52).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,18) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,22).*STATES(:,2)); ALGEBRAIC(:,19) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,20).*STATES(:,18)); ALGEBRAIC(:,20) = ALGEBRAIC(:,18)+ CONSTANTS(:,52).*CONSTANTS(:,3).*ALGEBRAIC(:,1)+ALGEBRAIC(:,19); ALGEBRAIC(:,17) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,21).*STATES(:,1)); ALGEBRAIC(:,50) = ALGEBRAIC(:,17)+ALGEBRAIC(:,19); ALGEBRAIC(:,121) = piecewise({ALGEBRAIC(:,49)==0.00000, CONSTANTS(:,23).*(exp(ALGEBRAIC(:,20)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,50)./( CONSTANTS(:,1).*CONSTANTS(:,2)))) }, ((( CONSTANTS(:,23).*ALGEBRAIC(:,49))./( CONSTANTS(:,1).*CONSTANTS(:,2)))./(exp(ALGEBRAIC(:,49)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - 1.00000)).*(exp(ALGEBRAIC(:,20)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,50)./( CONSTANTS(:,1).*CONSTANTS(:,2))))); ALGEBRAIC(:,48) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,16).*STATES(:,16))+ CONSTANTS(:,55).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,117) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,20).*STATES(:,18))+ CONSTANTS(:,58).*CONSTANTS(:,3).*ALGEBRAIC(:,1); ALGEBRAIC(:,120) = CONSTANTS(:,51).*(exp(ALGEBRAIC(:,48)./( CONSTANTS(:,1).*CONSTANTS(:,2))) - exp(ALGEBRAIC(:,117)./( CONSTANTS(:,1).*CONSTANTS(:,2)))); ALGEBRAIC(:,122) = ((ALGEBRAIC(:,105) - ALGEBRAIC(:,120))+ALGEBRAIC(:,62)) - - ALGEBRAIC(:,78); ALGEBRAIC(:,123) = CONSTANTS(:,3).*(((((((((((((((((((((((((((((((((((((((((((((((((((((((( - CONSTANTS(:,52).*ALGEBRAIC(:,121)+ CONSTANTS(:,58).*ALGEBRAIC(:,84)) - CONSTANTS(:,55).*ALGEBRAIC(:,84))+ CONSTANTS(:,58).*ALGEBRAIC(:,96)) - CONSTANTS(:,55).*ALGEBRAIC(:,96))+ CONSTANTS(:,58).*ALGEBRAIC(:,90)) - CONSTANTS(:,55).*ALGEBRAIC(:,90))+ CONSTANTS(:,58).*ALGEBRAIC(:,102)) - CONSTANTS(:,55).*ALGEBRAIC(:,102))+ CONSTANTS(:,58).*ALGEBRAIC(:,116)) - CONSTANTS(:,55).*ALGEBRAIC(:,116))+ CONSTANTS(:,56).*ALGEBRAIC(:,52)) - CONSTANTS(:,53).*ALGEBRAIC(:,52))+ CONSTANTS(:,56).*ALGEBRAIC(:,60)) - CONSTANTS(:,53).*ALGEBRAIC(:,60))+ CONSTANTS(:,57).*ALGEBRAIC(:,72)) - CONSTANTS(:,54).*ALGEBRAIC(:,72))+ CONSTANTS(:,57).*ALGEBRAIC(:,76)) - CONSTANTS(:,54).*ALGEBRAIC(:,76))+ CONSTANTS(:,57).*ALGEBRAIC(:,80)) - CONSTANTS(:,54).*ALGEBRAIC(:,80))+ CONSTANTS(:,58).*ALGEBRAIC(:,108)) - CONSTANTS(:,55).*ALGEBRAIC(:,108))+ CONSTANTS(:,56).*ALGEBRAIC(:,56)) - CONSTANTS(:,53).*ALGEBRAIC(:,56))+ CONSTANTS(:,56).*ALGEBRAIC(:,64)) - CONSTANTS(:,53).*ALGEBRAIC(:,64))+ CONSTANTS(:,57).*ALGEBRAIC(:,68)) - CONSTANTS(:,54).*ALGEBRAIC(:,68))+ CONSTANTS(:,58).*ALGEBRAIC(:,87)) - CONSTANTS(:,55).*ALGEBRAIC(:,87))+ CONSTANTS(:,58).*ALGEBRAIC(:,99)) - CONSTANTS(:,55).*ALGEBRAIC(:,99))+ CONSTANTS(:,58).*ALGEBRAIC(:,93)) - CONSTANTS(:,55).*ALGEBRAIC(:,93))+ CONSTANTS(:,58).*ALGEBRAIC(:,105)) - CONSTANTS(:,55).*ALGEBRAIC(:,105))+ CONSTANTS(:,58).*ALGEBRAIC(:,120)) - CONSTANTS(:,55).*ALGEBRAIC(:,120))+ CONSTANTS(:,56).*ALGEBRAIC(:,54)) - CONSTANTS(:,53).*ALGEBRAIC(:,54))+ CONSTANTS(:,56).*ALGEBRAIC(:,62)) - CONSTANTS(:,53).*ALGEBRAIC(:,62))+ CONSTANTS(:,57).*ALGEBRAIC(:,70)) - CONSTANTS(:,54).*ALGEBRAIC(:,70))+ CONSTANTS(:,57).*ALGEBRAIC(:,74)) - CONSTANTS(:,54).*ALGEBRAIC(:,74))+ CONSTANTS(:,57).*ALGEBRAIC(:,78)) - CONSTANTS(:,54).*ALGEBRAIC(:,78))+ CONSTANTS(:,57).*ALGEBRAIC(:,82)) - CONSTANTS(:,54).*ALGEBRAIC(:,82))+ CONSTANTS(:,58).*ALGEBRAIC(:,112)) - CONSTANTS(:,55).*ALGEBRAIC(:,112))+ CONSTANTS(:,56).*ALGEBRAIC(:,58)) - CONSTANTS(:,53).*ALGEBRAIC(:,58))+ CONSTANTS(:,56).*ALGEBRAIC(:,66)) - CONSTANTS(:,53).*ALGEBRAIC(:,66)); ALGEBRAIC(:,124) = (ALGEBRAIC(:,120)+ALGEBRAIC(:,66)) - (( - ALGEBRAIC(:,82)+ALGEBRAIC(:,121)) - ALGEBRAIC(:,121)); ALGEBRAIC(:,2) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,5).*STATES(:,3)); ALGEBRAIC(:,3) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,7).*STATES(:,4)); ALGEBRAIC(:,4) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,9).*STATES(:,5)); ALGEBRAIC(:,5) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,11).*STATES(:,6)); ALGEBRAIC(:,6) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,13).*STATES(:,7)); ALGEBRAIC(:,7) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,15).*STATES(:,8)); ALGEBRAIC(:,8) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,17).*STATES(:,9)); ALGEBRAIC(:,9) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,19).*STATES(:,10)); ALGEBRAIC(:,10) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,6).*STATES(:,11)); ALGEBRAIC(:,11) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,8).*STATES(:,12)); ALGEBRAIC(:,12) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,10).*STATES(:,13)); ALGEBRAIC(:,13) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,12).*STATES(:,14)); ALGEBRAIC(:,14) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,14).*STATES(:,15)); ALGEBRAIC(:,15) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,16).*STATES(:,16)); ALGEBRAIC(:,16) = CONSTANTS(:,1).*CONSTANTS(:,2).*log( CONSTANTS(:,18).*STATES(:,17)); end % Compute result of a piecewise function function x = piecewise(cases, default) set = [0]; for i = 1:2:length(cases) if (length(cases{i+1}) == 1) x(cases{i} & ~set,:) = cases{i+1}; else x(cases{i} & ~set,:) = cases{i+1}(cases{i} & ~set); end set = set | cases{i}; if(set), break, end end if (length(default) == 1) x(~set,:) = default; else x(~set,:) = default(~set); end end % Pad out or shorten strings to a set length function strout = strpad(strin) req_length = 160; insize = size(strin,2); if insize > req_length strout = strin(1:req_length); else strout = [strin, blanks(req_length - insize)]; end end