Model Mathematics

Component: environment

Component: v1

v1 = Vmax GL Km + GL

Component: v2

v2 = Vmax O2 Km + O2

Component: v3

v3 = k3 FA k3 = Vmax PS -1 PS0 -1 + PS -1

Component: v4

v4 = k4 FA k4 = Vmax epsilon AF -1 AF0 -1 + AF -1 + 1 - epsilon RS -1 RS0 -1 + RS -1

Component: v5

v5 = k5 GP k5 = Vmax epsilon PS PS0 + PS + 1 - epsilon RS -1 RS0 -1 + RS -1

Component: v6

v6 = k6 GP k6 = Vmax epsilon PS -1 PS0 -1 + PS -1 + 1 - epsilon CS -1 CS0 -1 + CS -1 2

Component: v7

v7 = k7 GY k7 = Vmax epsilon PS PS0 + PS + 1 - epsilon CS CS0 + CS 2

Component: v8

v8 = k8 TG k8 = Vmax

Component: v9

v9 = k9 PY k9 = Vmax RS RS0 + RS

Component: v10

v10 = k10 PY k10 = Vmax epsilon RS -1 RS0 -1 + RS -1 + 1 - epsilon AF -1 AF0 -1 + AF -1

Component: v11

v11 = k11 LA k11 = Vmax RS -1 RS0 -1 + RS -1

Component: v12

v12 = k12 AC k12 = Vmax epsilon RS -1 RS0 -1 + RS -1 + 1 - epsilon PS PS0 + PS

Component: v13

v13 = k13 CR k13 = Vmax PS -1 PS0 -1 + PS -1

Component: v14

v14 = k14 PC k14 = Vmax PS PS0 + PS

Component: v15

v15 = k15 CoA_pool k15 = Vmax epsilon RS -1 RS0 -1 + RS -1 + 1 - epsilon FC -1 FC0 -1 + FC -1

Component: v16

v16 = k16 AC k16 = Vmax epsilon RS -1 RS0 -1 + RS -1 + 1 - epsilon FC -1 FC0 -1 + FC -1

Component: v17

v17 = k17 ATP k17 = Vmax

Component: GL

dd time GL = F aGL - sigmaGL GL - v1

Component: FA

dd time FA = 3 v8 + F aFA - sigmaFA FA - v3 + v4

Component: GP

dd time GP = v1 + v7 - v5 + v6

Component: GY

dd time GY = v6 - v7

Component: TG

dd time TG = 1 3 v3 - v8

Component: PY

dd time PY = 2 v5 + v11 - v9 + v10

Component: LA

dd time LA = v9 + F aLA - sigmaLA LA - v11

Component: AC

dd time AC = v10 + v4 - v12 + v16

Component: FC

dd time FC = v12 + v15 + v16 - v10 + v4

Component: CoA_pool

dd time CoA_pool = v16 - v15

Component: O2

dd time O2 = F aO2 - sigmaO2 O2 - v2

Component: CO2

dd time CO2 = v10 + 2 v12 + F aCO2 - sigmaCO2 CO2

Component: NAD

dd time NAD = v9 + 2 v2 - 2 v5 + v10 + v11 + 11 3 v12 + 35 3 v4

Component: ADP

dd time ADP = v1 + v6 + 2 v4 + 2 v3 + v13 + v17 - 3 v5 + v12 + 6 v2 + v14

Component: PC

dd time PC = v13 - v14

Component: CR

dd time CR = v14 - v13

Component: ATP

Component: NADH

Component: CS0

Component: PS0

Component: RS0

Component: AF0

Component: FC0

Component: CS

CS = CR PC

Component: RS

RS = NADH NAD

Component: PS

PS = ADP ATP

Component: AF

AF = AC FC

Component: model_parameters

F = 1.0 if time > 0.0 time < 5.0 0.4 otherwise