Model Mathematics

Component: environment

Component: Asc

ddtimeAsc= gamma_Asc Asc C_Asc - Asc - pG + pDA T_Asc Asc

Component: Csc

ddtimeCsc= gamma_Csc Csc C_Csc - Csc + gmax GtnC 2.0 GtnC 2.0 + alpha_Csc 2.0 Csc - pE + pDC + pP T_Csc Csc

Component: G

ddtimeG= pG T_Asc Asc + k_gmax 1.0 - AC 2.0 AC 2.0 + alpha_HA 2.0 G - gamma_Fdmax 1.0 - Fd 2.0 Fd 2.0 + alpha_Fd 2.0 G + gamma_Gc G

Component: DA

ddtimeDA= pDA T_Asc Asc + k_dmax AC 2.0 AC 2.0 + alpha_HA 2.0 DA + gamma_Fdmax 1.0 - Fd 2.0 Fd 2.0 + alpha_Fd 2.0 DA - gamma_DA DA

Component: DC

ddtimeDC= pDC T_Asc Csc - gamma_DC DC

Component: E

ddtimeE= pE T_Csc Csc - gamma_E E + k_Emax GtnC 2.0 GtnC 2.0 + alpha_E 2.0 E

Component: P

ddtimeP= pP T_Csc Csc - gamma_P P

Component: feedback_mechanisms

pG=- f G 2.0 N_ 2.0 pDA=- f DA 2.0 N_ 2.0 pDC=- f DC 2.0 N_ 2.0 pP=- f P 2.0 N_ 2.0 pE=- f E 2.0 N_ 2.0

Component: GtnA

ddtimeGtnA=- G KNG1 NE NE + alpha_NG1 1.0 + SA kSG 1.0 + AC 2.0 AC 2.0 + kAG 2.0 + KNG2 NC NC + alpha_NG2 1.0 + SA kSG 1.0 + AC 2.0 AC 2.0 + kAG 2.0 + KFG Fd Fd + alpha_Fd 1.0 + SA kSG 1.0 + AC 2.0 AC 2.0 + kAG 2.0 kG + beta_G GtnA

Component: GtnC

ddtimeGtnC= beta_G GtnA - kappa_G GtnC

Component: SA

ddtimeSA=- DA KAS AA AA + alpha_AS 1.0 + SA kSS 1.0 + NC kNS + KGS NE NE + alpha_NS 1.0 + SA kSS 1.0 + NC kNS kappa_S SA

Component: SC

ddtimeSC=- DC KNS NE NE + alpha_NS 1.0 + SC kSS 1.0 + NC kNS + KGS GtnC GtnC + alpha_GS 1.0 + SC kSS 1.0 + NC kNS kappa_S SC

Component: HC

ddtimeHC=- E KNH NE NE + alpha_NH 1.0 + SC kSH + KGH GtnC GtnC + alpha_GH 1.0 + SC kSH kappa_H HC

Component: AC

ddtimeAC=- P KNA NC NC + alpha_NA 1.0 + SC kSA + HC HC + alpha_HA + KGA GtnC GtnC + alpha_GA 1.0 + SC kSA + KHA HC HC + alpha_HA 1.0 + SC kSA hb AC BC + k_Fdmax Fd Fd + alpha_Fd AC + beta_A AC

Component: AA

ddtimeAA= beta_A AC - kappa_A AA

Component: BC

ddtimeBC= k_BCmax NC NC + alpha_NB - hb AC BC + beta_B BC

Component: BA

ddtimeBA= k_BAmax NC NC + alpha_NB - hb AA BA + kappa_B BA

Component: NC

ddtimeNC= Nmax1 Fd Fd + kFd 1.0 + AC 2.0 AC 2.0 + kAN1 2.0 - kappa_NC NC + Bas1

Component: NE

ddtimeNE= Nmax2 Fd Fd + kFd 2.0 1.0 + AC 2.0 AC 2.0 + kAN2 2.0 - kappa_NE NE + Bas2

Component: model_parameters

Model Curation
  • Curation Status c0
  • JSim c0
  • COR c0
  • OpenCell c0
Source
Derived from workspace Joseph, Zavros, Merchant, Kirschner, 2003 at changeset 6e627a3ca839.
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License

This work is licensed under a Creative Commons Attribution 3.0 Unported License.