/* There are a total of 13 entries in the algebraic variable array. There are a total of 5 entries in each of the rate and state variable arrays. There are a total of 20 entries in the constant variable array. */ /* * VOI is time in component environment (second). * STATES[0] is V_s in component soma_compartment (mV). * CONSTANTS[0] is V_Na in component soma_compartment (mV). * CONSTANTS[1] is V_K in component soma_compartment (mV). * ALGEBRAIC[10] is I_Na in component soma_compartment (uA_per_cm2). * ALGEBRAIC[0] is I_K_DR in component soma_compartment (uA_per_cm2). * CONSTANTS[2] is g_K_DR in component soma_compartment (mS_per_cm2). * CONSTANTS[3] is g_Na in component soma_compartment (mS_per_cm2). * CONSTANTS[4] is g_c in component model_parameters (mS_per_cm2). * STATES[1] is V_D in component dendritic_compartment (mV). * CONSTANTS[5] is C_m in component model_parameters (uF_per_cm2). * CONSTANTS[6] is p in component model_parameters (dimensionless). * STATES[2] is n in component gating_variables (dimensionless). * STATES[3] is h in component gating_variables (dimensionless). * ALGEBRAIC[5] is m_infinity in component gating_variables (dimensionless). * CONSTANTS[7] is V_L in component dendritic_compartment (mV). * CONSTANTS[8] is V_NMDA in component dendritic_compartment (mV). * ALGEBRAIC[1] is I_L in component dendritic_compartment (uA_per_cm2). * ALGEBRAIC[12] is I_D in component dendritic_compartment (uA_per_cm2). * ALGEBRAIC[11] is I_pump in component dendritic_compartment (uA_per_cm2). * ALGEBRAIC[3] is I_NMDA in component dendritic_compartment (uA_per_cm2). * ALGEBRAIC[4] is I_Na_NMDA in component dendritic_compartment (uA_per_cm2). * CONSTANTS[9] is R_pump in component dendritic_compartment (uA_per_cm2). * CONSTANTS[10] is alpha in component dendritic_compartment (mMcm2_per_uAs). * CONSTANTS[11] is g_NMDA in component dendritic_compartment (mS_per_cm2). * CONSTANTS[12] is g_Na_NMDA in component dendritic_compartment (mS_per_cm2). * CONSTANTS[13] is g_L in component dendritic_compartment (mS_per_cm2). * STATES[4] is Na in component dendritic_compartment (mM). * CONSTANTS[14] is Na_eq in component dendritic_compartment (mM). * CONSTANTS[15] is K_p in component dendritic_compartment (mM). * CONSTANTS[16] is Mg_o in component dendritic_compartment (mM). * CONSTANTS[17] is K_Mg in component dendritic_compartment (mM). * CONSTANTS[18] is q in component dendritic_compartment (mV). * ALGEBRAIC[2] is phi_Na in component dendritic_compartment (dimensionless). * CONSTANTS[19] is phi_Na_eq in component dendritic_compartment (dimensionless). * ALGEBRAIC[6] is n_infinity in component gating_variables (dimensionless). * ALGEBRAIC[7] is h_infinity in component gating_variables (dimensionless). * ALGEBRAIC[8] is tau_h in component gating_variables (second). * ALGEBRAIC[9] is tau_n in component gating_variables (second). * RATES[0] is d/dt V_s in component soma_compartment (mV). * RATES[1] is d/dt V_D in component dendritic_compartment (mV). * RATES[4] is d/dt Na in component dendritic_compartment (mM). * RATES[3] is d/dt h in component gating_variables (dimensionless). * RATES[2] is d/dt n in component gating_variables (dimensionless). * There are a total of 0 condition variables. */ void initConsts(double* CONSTANTS, double* RATES, double *STATES) { STATES[0] = -64; CONSTANTS[0] = 55; CONSTANTS[1] = -85; CONSTANTS[2] = 3.2; CONSTANTS[3] = 3.2; CONSTANTS[4] = 0.0; STATES[1] = -25.0; CONSTANTS[5] = 1; CONSTANTS[6] = 0.5; STATES[2] = 0.002; STATES[3] = 1; CONSTANTS[7] = -50; CONSTANTS[8] = 0; CONSTANTS[9] = 18.0; CONSTANTS[10] = 0.5; CONSTANTS[11] = 1.25; CONSTANTS[12] = 1.0; CONSTANTS[13] = 0.18; STATES[4] = 5.09; CONSTANTS[14] = 8; CONSTANTS[15] = 15; CONSTANTS[16] = 1.4; CONSTANTS[17] = 10.0; CONSTANTS[18] = 12.5; CONSTANTS[19] = pow(CONSTANTS[14], 3.00000)/(pow(CONSTANTS[14], 3.00000)+pow(CONSTANTS[15], 3.00000)); RATES[0] = 0.1001; RATES[1] = 0.1001; RATES[4] = 0.1001; RATES[3] = 0.1001; RATES[2] = 0.1001; } void computeResiduals(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES, double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS) { resid[0] = RATES[0] - - ( 1000.00*(ALGEBRAIC[0]+ALGEBRAIC[10]+ (CONSTANTS[4]/CONSTANTS[6])*(STATES[0] - STATES[1])))/CONSTANTS[5]; resid[1] = RATES[1] - - ( 1000.00*(ALGEBRAIC[3]+ALGEBRAIC[11]+ALGEBRAIC[1]+ (CONSTANTS[4]/(1.00000 - CONSTANTS[6]))*(STATES[1] - STATES[0])))/CONSTANTS[5]; resid[2] = RATES[4] - CONSTANTS[10]*(- ALGEBRAIC[4] - 3.00000*ALGEBRAIC[11]); resid[3] = RATES[3] - (ALGEBRAIC[7] - STATES[3])/ALGEBRAIC[8]; resid[4] = RATES[2] - (ALGEBRAIC[6] - STATES[2])/ALGEBRAIC[9]; } void computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC) { ALGEBRAIC[12] = ALGEBRAIC[3]+ALGEBRAIC[11]+ALGEBRAIC[1]; } void computeEssentialVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC) { ALGEBRAIC[0] = CONSTANTS[2]*(STATES[0] - CONSTANTS[1])*pow(STATES[2], 2.00000); ALGEBRAIC[1] = CONSTANTS[13]*(STATES[1] - CONSTANTS[7]); ALGEBRAIC[3] = (CONSTANTS[11]/(1.00000+ (CONSTANTS[16]/CONSTANTS[17])*exp(- (STATES[1]/CONSTANTS[18]))))*(STATES[1] - CONSTANTS[8]); ALGEBRAIC[4] = (CONSTANTS[12]/(1.00000+ (CONSTANTS[16]/CONSTANTS[17])*exp(- (STATES[1]/CONSTANTS[18]))))*(STATES[1] - CONSTANTS[0]); ALGEBRAIC[6] = 1.00000/(1.00000+exp(- (STATES[0]+31.0000)/5.30000)); ALGEBRAIC[7] = 1.00000/(1.00000+exp((STATES[0]+30.0000)/8.30000)); ALGEBRAIC[8] = 0.400000*(1.00000+2.00000/(1.00000+exp((STATES[0]+25.0000)/5.00000))); ALGEBRAIC[9] = (0.800000+1.60000/(1.00000+exp( 0.100000*(STATES[0]+25.0000))))/(1.00000+exp( - 0.100000*(STATES[0]+70.0000))); ALGEBRAIC[5] = 1.00000/(1.00000+exp(- (STATES[0]+35.0000)/6.20000)); ALGEBRAIC[10] = CONSTANTS[3]*STATES[3]*(STATES[0] - CONSTANTS[0])*pow(ALGEBRAIC[5], 3.00000); ALGEBRAIC[2] = pow(STATES[4], 3.00000)/(pow(STATES[4], 3.00000)+pow(CONSTANTS[15], 3.00000)); ALGEBRAIC[11] = CONSTANTS[9]*(ALGEBRAIC[2] - CONSTANTS[19]); } void getStateInformation(double* SI) { SI[0] = 1.0; SI[1] = 1.0; SI[2] = 1.0; SI[3] = 1.0; SI[4] = 1.0; } void computeRoots(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES, double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS) { }