Location: An encoding of the human ORd model by Steve Neiderer @ 85efe82cc60f / action-potential.xml

Author:

David Nickerson <nickerso@users.sourceforge.net>

Date:

2011-11-16 23:17:45+13:00

Desc:

SRuS uses the namespaces defined in the source document to resolve xpath expressions, so need to define the correct set of namespaces in order to get simulations to run

Permanent Source URI:

http://models.cellml.org/w/andre/SAN-ORd/rawfile/85efe82cc60f41c7058d0e31ab4b82ea04471d36/action-potential.xml

<?xml version="1.0" encoding="utf-8"?>
<sedML  xmlns="http://sed-ml.org/" xmlns:cellml="http://www.cellml.org/cellml/1.0#" xmlns:cmeta="http://www.cellml.org/metadata/1.1#" xmlns:math="http://www.w3.org/1998/Math/MathML" level="1" version="1">
 <listOfSimulations>
   <uniformTimeCourse id="simulation1" 
    initialTime="0" outputStartTime="0" outputEndTime="1000" 
    numberOfPoints="1000" >
     <algorithm kisaoID="KISAO:0000019"/>
    </uniformTimeCourse>
 </listOfSimulations>
 <listOfModels>
  <model id="model1" name="ORd" language="urn:sedml:language:cellml" source="http://models.cellml.org/w/andre/SAN-ORd/@@rawfile/dd8799c44edbea63a2b6b9754bc889dd24c2e6d1/Ohara_Rudy_2011.cellml"/>
 </listOfModels>
 
  <listOfTasks>
    <task id="task1" name="Action Potential" modelReference="model1" simulationReference="simulation1"/>
  </listOfTasks>
  <listOfDataGenerators>
    <dataGenerator id="time" name="time">
      <listOfVariables>
        <variable id="t" taskReference="task1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" />
      </listOfVariables>
      <math:math>
        <math:ci>t</math:ci>
      </math:math>
    </dataGenerator>
    
    <dataGenerator id="Vm" name="Membrane Potential">
      <listOfVariables>
        <variable id="v" taskReference="task1" target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='v']" />
      </listOfVariables>
      <math:math>
        <math:ci>v</math:ci>
      </math:math>
    </dataGenerator>
  </listOfDataGenerators>
  
  <listOfOutputs>
    <plot2D id="plot1" name="Action Potential">
      <listOfCurves>
        <curve id="c1" logX="false" logY="false" xDataReference="time" yDataReference="Vm" />
      </listOfCurves>
    </plot2D>
  </listOfOutputs>
</sedML>