Location: An encoding of the human ORd model by Steve Neiderer @ b4e719b237a8 / action-potential.xml

Author:

David Nickerson <nickerso@users.sourceforge.net>

Date:

2011-11-17 17:19:50+13:00

Desc:

update stimulus protocol to allow offset of applied stimulus from time 0

Permanent Source URI:

http://models.cellml.org/w/andre/SAN-ORd/rawfile/b4e719b237a8d183ab7c7ab54db304722f726b0b/action-potential.xml

<?xml version="1.0" encoding="utf-8"?>
<sedML  xmlns="http://sed-ml.org/" xmlns:cellml="http://www.cellml.org/cellml/1.0#" xmlns:cmeta="http://www.cellml.org/metadata/1.1#" xmlns:math="http://www.w3.org/1998/Math/MathML" level="1" version="1">
 <listOfSimulations>
   <uniformTimeCourse id="simulation1" 
    initialTime="0" outputStartTime="0" outputEndTime="1000" 
    numberOfPoints="1000" >
     <algorithm kisaoID="KISAO:0000019"/>
    </uniformTimeCourse>
 </listOfSimulations>
 <listOfModels>
  <model id="model1" name="ORd" language="urn:sedml:language:cellml" source="http://models.cellml.org/w/andre/SAN-ORd/@@rawfile/dd8799c44edbea63a2b6b9754bc889dd24c2e6d1/Ohara_Rudy_2011.cellml"/>
 </listOfModels>
 
  <listOfTasks>
    <task id="task1" name="Action Potential" modelReference="model1" simulationReference="simulation1"/>
  </listOfTasks>
  <listOfDataGenerators>
    <dataGenerator id="time" name="time">
      <listOfVariables>
        <variable id="t" taskReference="task1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" />
      </listOfVariables>
      <math:math>
        <math:ci>t</math:ci>
      </math:math>
    </dataGenerator>
    
    <dataGenerator id="Vm" name="Membrane Potential">
      <listOfVariables>
        <variable id="v" taskReference="task1" target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='v']" />
      </listOfVariables>
      <math:math>
        <math:ci>v</math:ci>
      </math:math>
    </dataGenerator>
  </listOfDataGenerators>
  
  <listOfOutputs>
    <plot2D id="plot1" name="Action Potential">
      <listOfCurves>
        <curve id="c1" logX="false" logY="false" xDataReference="time" yDataReference="Vm" />
      </listOfCurves>
    </plot2D>
  </listOfOutputs>
</sedML>