Location: VPH-MIP case study on CellML @ 58e44de10bed / components / gating-variable.xml

Author:
David Nickerson <nickerso@users.sourceforge.net>
Date:
2012-10-05 15:20:03+13:00
Desc:
updating documentation to better reflect the VPH-MIP slides and mention how to reproduce the simulation results; adding plot of gating variables added to the SED-ML
Permanent Source URI:
http://models.cellml.org/w/andre/VPH-MIP/rawfile/58e44de10bed7fbc87fd1d437f3001c7b653a738/components/gating-variable.xml

<?xml version="1.0" encoding="iso-8859-1"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink" name="hh_gating_variable">
  
  <import xlink:href="units.xml">
    <units name="ms" units_ref="ms"/>
    <units name="per_ms" units_ref="per_ms"/>
  </import>
  <component name="hh_gating_variable">
    <variable name="time" public_interface="in" private_interface="out" units="ms"/>
    <variable name="X" initial_value="X_initial" public_interface="out" private_interface="out" units="dimensionless"/>
    <variable name="X_initial" public_interface="in" private_interface="out" units="dimensionless"/>
    <variable name="alpha_X" public_interface="in" private_interface="out" units="per_ms"/>
    <variable name="beta_X" public_interface="in" private_interface="out" units="per_ms"/>
    <math xmlns="http://www.w3.org/1998/Math/MathML">
      <apply><eq/>
        <apply><diff/>
          <bvar><ci>time</ci></bvar>
          <ci>X</ci>
        </apply>
        <apply><minus/>
          <apply><times/>
            <ci>alpha_X</ci>
            <apply><minus/>
              <cn cellml:units="dimensionless">1.0</cn>
              <ci>X</ci>
            </apply>
          </apply>
          <apply><times/>
            <ci>beta_X</ci>
            <ci>X</ci>
          </apply>
        </apply>
      </apply>
    </math>
  </component>
</model>