- Author:
- Hanne Nielsen <hnie010@aucklanduni.ac.nz>
- Date:
- 2011-09-30 09:21:47+13:00
- Desc:
- Added xul and session file
- Permanent Source URI:
- http://models.cellml.org/w/hnielsen/swat_2004/rawfile/743b8da492d53e5750c27760daa54e9ed3e68d2d/swat_2004.cellml
<?xml version="1.0"?>
<!--
This CellML file was generated on 18/03/2011 at 4:17:40 at p.m. using:
COR (0.9.31.1409)
Copyright 2002-2011 Dr Alan Garny
http://cor.physiol.ox.ac.uk/ - cor@physiol.ox.ac.uk
CellML 1.0 was used to generate this model
http://www.cellml.org/
--><model xmlns="http://www.cellml.org/cellml/1.0#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" cmeta:id="swat_2004" name="swat_2004">
<units name="hour">
<unit multiplier="3600" units="second"/>
</units>
<units name="CONC">
<unit units="mole"/>
<unit exponent="-1" units="litre"/>
</units>
<component name="environment">
<variable cmeta:id="environment_time" name="time" public_interface="out" units="hour"/>
</component>
<component name="pRB">
<variable cmeta:id="pRB_pRB" initial_value="0" name="pRB" public_interface="out" units="CONC"/>
<variable name="k1" public_interface="in" units="dimensionless"/>
<variable name="E2F1" public_interface="in" units="CONC"/>
<variable name="km1" public_interface="in" units="dimensionless"/>
<variable name="j11" public_interface="in" units="dimensionless"/>
<variable name="j61" public_interface="in" units="dimensionless"/>
<variable name="k16" public_interface="in" units="dimensionless"/>
<variable name="CycDa" public_interface="in" units="CONC"/>
<variable name="k61" public_interface="in" units="dimensionless"/>
<variable name="pRBp" public_interface="in" units="CONC"/>
<variable name="phi_pRB" public_interface="in" units="dimensionless"/>
<variable name="time" public_interface="in" units="hour"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>time</ci>
</bvar>
<ci>pRB</ci>
</apply>
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<minus/>
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<plus/>
<apply>
<minus/>
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<times/>
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<apply>
<divide/>
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<plus/>
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</apply>
</apply>
<apply>
<divide/>
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<divide/>
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<times/>
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</apply>
</apply>
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<apply>
<times/>
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<ci>CycDa</ci>
</apply>
</apply>
<apply>
<times/>
<ci>k61</ci>
<ci>pRBp</ci>
</apply>
</apply>
<apply>
<times/>
<ci>phi_pRB</ci>
<ci>pRB</ci>
</apply>
</apply>
</apply>
</math>
</component>
<component name="E2F1">
<variable cmeta:id="E2F1_E2F1" initial_value="0" name="E2F1" public_interface="out" units="CONC"/>
<variable name="kp" public_interface="in" units="dimensionless"/>
<variable name="k2" public_interface="in" units="dimensionless"/>
<variable name="a" public_interface="in" units="dimensionless"/>
<variable name="km2" public_interface="in" units="dimensionless"/>
<variable name="j12" public_interface="in" units="dimensionless"/>
<variable name="pRB" public_interface="in" units="CONC"/>
<variable name="j62" public_interface="in" units="dimensionless"/>
<variable name="pRBp" public_interface="in" units="CONC"/>
<variable name="phi_E2F1" public_interface="in" units="dimensionless"/>
<variable name="time" public_interface="in" units="hour"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
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<eq/>
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<ci>time</ci>
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<minus/>
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<plus/>
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<plus/>
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</apply>
<apply>
<plus/>
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<power/>
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<plus/>
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</apply>
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<times/>
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<plus/>
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</apply>
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</apply>
</apply>
<apply>
<times/>
<ci>phi_CycDi</ci>
<ci>CycDi</ci>
</apply>
</apply>
</apply>
</math>
</component>
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<variable cmeta:id="AP1_AP1" initial_value="0" name="AP1" public_interface="out" units="CONC"/>
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<variable name="k25" public_interface="in" units="dimensionless"/>
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<variable name="pRB" public_interface="in" units="CONC"/>
<variable name="j65" public_interface="in" units="dimensionless"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
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<times/>
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<variable name="phi_pRBp" public_interface="in" units="dimensionless"/>
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<times/>
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<variable name="pRBp" public_interface="in" units="CONC"/>
<variable name="CycEa" public_interface="in" units="CONC"/>
<variable name="k98" public_interface="in" units="dimensionless"/>
<variable name="k89" public_interface="in" units="dimensionless"/>
<variable name="km9" public_interface="in" units="dimensionless"/>
<variable name="phi_CycEi" public_interface="in" units="dimensionless"/>
<variable name="time" public_interface="in" units="hour"/>
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<plus/>
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<apply>
<times/>
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<plus/>
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<times/>
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</apply>
</math>
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<variable initial_value="0.05" name="phi_CycEa" public_interface="out" units="dimensionless"/>
<variable initial_value="0" name="Fm" public_interface="out" units="dimensionless"/>
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<map_variables variable_1="time" variable_2="time"/>
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<connection>
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<map_variables variable_1="time" variable_2="time"/>
</connection>
<connection>
<map_components component_1="environment" component_2="CycDi"/>
<map_variables variable_1="time" variable_2="time"/>
</connection>
<connection>
<map_components component_1="environment" component_2="CycDa"/>
<map_variables variable_1="time" variable_2="time"/>
</connection>
<connection>
<map_components component_1="environment" component_2="AP1"/>
<map_variables variable_1="time" variable_2="time"/>
</connection>
<connection>
<map_components component_1="environment" component_2="pRBp"/>
<map_variables variable_1="time" variable_2="time"/>
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<connection>
<map_components component_1="environment" component_2="pRBpp"/>
<map_variables variable_1="time" variable_2="time"/>
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<connection>
<map_components component_1="environment" component_2="CycEi"/>
<map_variables variable_1="time" variable_2="time"/>
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<connection>
<map_components component_1="environment" component_2="CycEa"/>
<map_variables variable_1="time" variable_2="time"/>
</connection>
<connection>
<map_components component_1="pRB" component_2="model_parameters"/>
<map_variables variable_1="k1" variable_2="k1"/>
<map_variables variable_1="km1" variable_2="km1"/>
<map_variables variable_1="j61" variable_2="j61"/>
<map_variables variable_1="j11" variable_2="j11"/>
<map_variables variable_1="k16" variable_2="k16"/>
<map_variables variable_1="k61" variable_2="k61"/>
<map_variables variable_1="phi_pRB" variable_2="phi_pRB"/>
</connection>
<connection>
<map_components component_1="E2F1" component_2="model_parameters"/>
<map_variables variable_1="kp" variable_2="kp"/>
<map_variables variable_1="k2" variable_2="k2"/>
<map_variables variable_1="a" variable_2="a"/>
<map_variables variable_1="km2" variable_2="km2"/>
<map_variables variable_1="j12" variable_2="j12"/>
<map_variables variable_1="j62" variable_2="j62"/>
<map_variables variable_1="phi_E2F1" variable_2="phi_E2F1"/>
</connection>
<connection>
<map_components component_1="CycDi" component_2="model_parameters"/>
<map_variables variable_1="k3" variable_2="k3"/>
<map_variables variable_1="k23" variable_2="k23"/>
<map_variables variable_1="j13" variable_2="j13"/>
<map_variables variable_1="j63" variable_2="j63"/>
<map_variables variable_1="k43" variable_2="k43"/>
<map_variables variable_1="k34" variable_2="k34"/>
<map_variables variable_1="km4" variable_2="km4"/>
<map_variables variable_1="phi_CycDi" variable_2="phi_CycDi"/>
</connection>
<connection>
<map_components component_1="CycDa" component_2="model_parameters"/>
<map_variables variable_1="k34" variable_2="k34"/>
<map_variables variable_1="km4" variable_2="km4"/>
<map_variables variable_1="k43" variable_2="k43"/>
<map_variables variable_1="phi_CycDa" variable_2="phi_CycDa"/>
</connection>
<connection>
<map_components component_1="AP1" component_2="model_parameters"/>
<map_variables variable_1="Fm" variable_2="Fm"/>
<map_variables variable_1="k25" variable_2="k25"/>
<map_variables variable_1="j15" variable_2="j15"/>
<map_variables variable_1="j65" variable_2="j65"/>
<map_variables variable_1="phi_AP1" variable_2="phi_AP1"/>
</connection>
<connection>
<map_components component_1="pRBp" component_2="model_parameters"/>
<map_variables variable_1="k16" variable_2="k16"/>
<map_variables variable_1="k61" variable_2="k61"/>
<map_variables variable_1="k67" variable_2="k67"/>
<map_variables variable_1="k76" variable_2="k76"/>
<map_variables variable_1="phi_pRBp" variable_2="phi_pRBp"/>
</connection>
<connection>
<map_components component_1="pRBpp" component_2="model_parameters"/>
<map_variables variable_1="k67" variable_2="k67"/>
<map_variables variable_1="k76" variable_2="k76"/>
<map_variables variable_1="phi_pRBpp" variable_2="phi_pRBpp"/>
</connection>
<connection>
<map_components component_1="CycEi" component_2="model_parameters"/>
<map_variables variable_1="k28" variable_2="k28"/>
<map_variables variable_1="k98" variable_2="k98"/>
<map_variables variable_1="k89" variable_2="k89"/>
<map_variables variable_1="km9" variable_2="km9"/>
<map_variables variable_1="j18" variable_2="j18"/>
<map_variables variable_1="j68" variable_2="j68"/>
<map_variables variable_1="phi_CycEi" variable_2="phi_CycEi"/>
</connection>
<connection>
<map_components component_1="CycEa" component_2="model_parameters"/>
<map_variables variable_1="k98" variable_2="k98"/>
<map_variables variable_1="k89" variable_2="k89"/>
<map_variables variable_1="km9" variable_2="km9"/>
<map_variables variable_1="phi_CycEa" variable_2="phi_CycEa"/>
</connection>
<connection>
<map_components component_1="pRB" component_2="E2F1"/>
<map_variables variable_1="E2F1" variable_2="E2F1"/>
<map_variables variable_1="pRB" variable_2="pRB"/>
</connection>
<connection>
<map_components component_1="pRB" component_2="CycDa"/>
<map_variables variable_1="CycDa" variable_2="CycDa"/>
</connection>
<connection>
<map_components component_1="pRB" component_2="pRBp"/>
<map_variables variable_1="pRBp" variable_2="pRBp"/>
<map_variables variable_1="pRB" variable_2="pRB"/>
</connection>
<connection>
<map_components component_1="E2F1" component_2="pRBp"/>
<map_variables variable_1="pRBp" variable_2="pRBp"/>
</connection>
<connection>
<map_components component_1="CycDi" component_2="AP1"/>
<map_variables variable_1="AP1" variable_2="AP1"/>
</connection>
<connection>
<map_components component_1="CycDi" component_2="E2F1"/>
<map_variables variable_1="E2F1" variable_2="E2F1"/>
</connection>
<connection>
<map_components component_1="CycDi" component_2="pRB"/>
<map_variables variable_1="pRB" variable_2="pRB"/>
</connection>
<connection>
<map_components component_1="CycDi" component_2="pRBp"/>
<map_variables variable_1="pRBp" variable_2="pRBp"/>
</connection>
<connection>
<map_components component_1="CycDi" component_2="CycDa"/>
<map_variables variable_1="CycDi" variable_2="CycDi"/>
<map_variables variable_1="CycDa" variable_2="CycDa"/>
</connection>
<connection>
<map_components component_1="AP1" component_2="pRB"/>
<map_variables variable_1="pRB" variable_2="pRB"/>
</connection>
<connection>
<map_components component_1="AP1" component_2="pRBp"/>
<map_variables variable_1="pRBp" variable_2="pRBp"/>
</connection>
<connection>
<map_components component_1="AP1" component_2="E2F1"/>
<map_variables variable_1="E2F1" variable_2="E2F1"/>
</connection>
<connection>
<map_components component_1="pRBp" component_2="CycDa"/>
<map_variables variable_1="CycDa" variable_2="CycDa"/>
</connection>
<connection>
<map_components component_1="pRBp" component_2="CycEa"/>
<map_variables variable_1="CycEa" variable_2="CycEa"/>
</connection>
<connection>
<map_components component_1="pRBp" component_2="pRBpp"/>
<map_variables variable_1="pRBpp" variable_2="pRBpp"/>
<map_variables variable_1="pRBp" variable_2="pRBp"/>
</connection>
<connection>
<map_components component_1="pRBpp" component_2="CycEa"/>
<map_variables variable_1="CycEa" variable_2="CycEa"/>
</connection>
<connection>
<map_components component_1="CycEi" component_2="E2F1"/>
<map_variables variable_1="E2F1" variable_2="E2F1"/>
</connection>
<connection>
<map_components component_1="CycEi" component_2="pRB"/>
<map_variables variable_1="pRB" variable_2="pRB"/>
</connection>
<connection>
<map_components component_1="CycEi" component_2="pRBp"/>
<map_variables variable_1="pRBp" variable_2="pRBp"/>
</connection>
<connection>
<map_components component_1="CycEi" component_2="CycEa"/>
<map_variables variable_1="CycEa" variable_2="CycEa"/>
<map_variables variable_1="CycEi" variable_2="CycEi"/>
</connection>
</model>