Location: Core Domains Principled Model Example @ cce6374c21a6 / Bioenvironment_Transport_RNA.cellml

Author:
Michael Cooling <mcoo001@UoA.auckland.ac.nz>
Date:
2016-04-11 12:26:19+12:00
Desc:
Adding .zip file of complete model
Permanent Source URI:
http://models.cellml.org/workspace/2c5/rawfile/cce6374c21a60771321701b2f88857175ca5c31e/Bioenvironment_Transport_RNA.cellml
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<?xml version="1.0" encoding="utf-8"?>
<model name="Bioenvironment_Transport_RNA" cmeta:id="Bioenvironment_Transport_RNA" 
    xmlns="http://www.cellml.org/cellml/1.1#"
    xmlns:cellml="http://www.cellml.org/cellml/1.1#"
    xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
    xmlns:xlink="http://www.w3.org/1999/xlink"
    >

	<import xlink:href="Principled_Base/Units_Cellular_Systems.cellml">
		<units name="nM_per_s" units_ref="nM_per_s" />
		<units name="nM" units_ref="nM" />
		<units name="femtoliter" units_ref="femtoliter" />
	</import> 
     
    <component name="Bioenvironment_Transport_RNA_Parameters">
          <variable name="k" units="per_s" initial_value="0.8" public_interface="out" />
          <variable name="fromVolume" units="femtoliter" initial_value="2" public_interface="out" />
          <variable name="toVolume" units="femtoliter" initial_value="100" public_interface="out" />
    </component>


  <import xlink:href="Principled_Base/Template_RateEqR1_uM.cellml">
  	<units name="per_s" units_ref="per_s" />
    	<component name="Template_RateEqR1_uM" component_ref="Template_RateEqR1_uM" />
  </import>

   <component name="Bioenvironment_Transport_RNA">
    <variable name="concentration" units="nM" private_interface="out" public_interface="in" />
    <variable name="k" units="per_s" public_interface="in" private_interface="out"/>
    <variable name="fromVolume" units="femtoliter" public_interface="in" />
    <variable name="toVolume" units="femtoliter" public_interface="in" />
    <variable name="J_fromVolume" units="nM_per_s" private_interface="in" public_interface="out" />
    <variable name="J_toVolume" units="nM_per_s" public_interface="out" />
	<math xmlns="http://www.w3.org/1998/Math/MathML">
	<apply>
		<eq/>
		<ci>J_toVolume</ci>
		<apply><times/>
			<ci>J_fromVolume</ci>
			<apply><divide/>
				<ci>fromVolume</ci>
				<ci>toVolume</ci>
			</apply>
		</apply>
	</apply>
	</math> 

    
    
   </component>
 
   <group>
    <relationship_ref relationship="encapsulation" />
    <component_ref component="Bioenvironment_Transport_RNA">
      <component_ref component="Template_RateEqR1_uM" />
    </component_ref>
   </group> 
  
   <connection>
      <map_components component_1="Template_RateEqR1_uM" component_2="Bioenvironment_Transport_RNA"/>
      <map_variables variable_1="k" variable_2="k"/>
      <map_variables variable_1="concentration" variable_2="concentration"/>
      <map_variables variable_1="J" variable_2="J_fromVolume"/>
   </connection>

</model>