Location: Cardiovascular Circulation @ d364629a8aef / viscoTest.cellml

Author:
Soroush Safaei <ssaf006@aucklanduni.ac.nz>
Date:
2019-04-13 22:38:38+12:00
Desc:
fix the heart model conditions
Permanent Source URI:
http://models.cellml.org/workspace/4ac/rawfile/d364629a8aef513c2cd18c3175a1cc4baae4c6f1/viscoTest.cellml

<?xml version='1.0'?>
<model name="Vessel_BG_Units" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
    <import xlink:href="Units.cellml">
        <units name="m3" units_ref="m3"/>
        <units name="m3_per_s" units_ref="m3_per_s"/>
        <units name="m3_per_s2" units_ref="m3_per_s2"/>
        <units name="m6_per_J" units_ref="m6_per_J"/>
        <units name="per_m" units_ref="per_m"/>
        <units name="J_per_m3" units_ref="J_per_m3"/>
        <units name="J_s_per_m6" units_ref="J_s_per_m6"/>
        <units name="J_s2_per_m6" units_ref="J_s2_per_m6"/>
        <units name="J_s2_per_m5" units_ref="J_s2_per_m5"/>
        <units name="J_per_s" units_ref="J_per_s"/>
        <units name="J_per_m6" units_ref="J_per_m6"/>
        <units name="J_s_per_m3" units_ref="J_s_per_m3"/>
        <units name="UnitValve" units_ref="UnitValve"/>
    </import>
    <component name="pp_type">
        <variable name="t" units="second"/>
        <!-- Constitutive Parameters-->
        <variable initial_value="0.004" name="mu" units="J_s_per_m3"/>
        <variable initial_value="1050" name="rho" units="J_s_per_m3"/>
        <variable initial_value="1.6e+6" name="E" units="J_per_m3"/>
        <variable initial_value="0.182233e-2" name="l" units="metre"/>
        <variable initial_value="0.00031" name="h" units="metre"/>
        <variable initial_value="0.104132e-2" name="r" units="metre"/>
        <variable name="I" units="J_s2_per_m6"/>
        <variable name="C" units="m6_per_J"/>
        <variable name="R" units="J_s_per_m6"/>
        <variable name="R_visco" units="J_s_per_m6"/>
        <!-- State Variables-->
        <variable initial_value="0.0" name="q_distal" units="m3"/>
        <variable initial_value="0.0" name="q_proximal" units="m3"/>
        <variable initial_value="0.0" name="v_proximal" units="m3_per_s"/>
        <variable initial_value="0.0" name="v_distal" units="m3_per_s"/>
        <variable name="v_visco" units="m3_per_s"/>
        <variable name="u_in" units="J_per_m3"/>
        <variable initial_value="1000" name="u_out" units="J_per_m3"/>
        <variable name="u_visco" units="J_per_m3"/>
        <variable name="u_C_visco" units="J_per_m3"/>
        <variable name="u_R_visco" units="J_per_m3"/>
        <!-- Boundary Conditions-->
        <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
                <eq/>
                <ci>u_in</ci>
                <apply>
                    <plus/>
                    <cn cellml:units="dimensionless">13000</cn>
                    <apply>
                        <times/>
                        <cn cellml:units="dimensionless">2000</cn>
                        <apply>
                            <sin/>
                            <apply>
                                <times/>
                                <cn cellml:units="dimensionless">5</cn>
                                <ci>t</ci>
                            </apply>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <!-- Parameters-->
            <apply>
                <eq/>
                <ci>I</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <ci>rho</ci>
                        <ci>l</ci>
                    </apply>
                    <apply>
                        <times/>
                        <pi/>
                        <apply>
                            <power/>
                            <ci>r</ci>
                            <cn cellml:units="dimensionless">2</cn>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>C</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="dimensionless">2</cn>
                        <pi/>
                        <apply>
                            <power/>
                            <ci>r</ci>
                            <cn cellml:units="dimensionless">3</cn>
                        </apply>
                        <ci>l</ci>
                    </apply>
                    <apply>
                        <times/>
                        <ci>E</ci>
                        <ci>h</ci>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>R</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="dimensionless">8</cn>
                        <ci>mu</ci>
                        <ci>l</ci>
                    </apply>
                    <apply>
                        <times/>
                        <pi/>
                        <apply>
                            <power/>
                            <ci>r</ci>
                            <cn cellml:units="dimensionless">4</cn>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>R_visco</ci>
                <apply>
                    <divide/>
                    <cn cellml:units="second" type="e-notation">0.01<sep/>6</cn>
                    <ci>C</ci>
                </apply>
            </apply>
            <!-- Conservation Laws
0.00757711893685179
0.00757653133993883-->
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>t</ci>
                    </bvar>
                    <ci>q_distal</ci>
                </apply>
                <ci>v_distal</ci>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>t</ci>
                    </bvar>
                    <ci>q_proximal</ci>
                </apply>
                <ci>v_proximal</ci>
            </apply>
            <apply>
                <eq/>
                <ci>v_visco</ci>
                <apply>
                    <minus/>
                    <ci>v_proximal</ci>
                    <ci>v_distal</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>u_visco</ci>
                <apply>
                    <plus/>
                    <ci>u_C_visco</ci>
                    <ci>u_R_visco</ci>
                </apply>
            </apply>
            <!-- Constitutive Relations-->
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>t</ci>
                    </bvar>
                    <ci>v_proximal</ci>
                </apply>
                <apply>
                    <divide/>
                    <apply>
                        <minus/>
                        <apply>
                            <minus/>
                            <ci>u_in</ci>
                            <ci>u_visco</ci>
                        </apply>
                        <apply>
                            <times/>
                            <apply>
                                <divide/>
                                <ci>R</ci>
                                <cn cellml:units="dimensionless">2</cn>
                            </apply>
                            <ci>v_proximal</ci>
                        </apply>
                    </apply>
                    <apply>
                        <divide/>
                        <ci>I</ci>
                        <cn cellml:units="dimensionless">2</cn>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>t</ci>
                    </bvar>
                    <ci>v_distal</ci>
                </apply>
                <apply>
                    <divide/>
                    <apply>
                        <minus/>
                        <apply>
                            <minus/>
                            <ci>u_visco</ci>
                            <ci>u_out</ci>
                        </apply>
                        <apply>
                            <times/>
                            <apply>
                                <divide/>
                                <ci>R</ci>
                                <cn cellml:units="dimensionless">2</cn>
                            </apply>
                            <ci>v_distal</ci>
                        </apply>
                    </apply>
                    <apply>
                        <divide/>
                        <ci>I</ci>
                        <cn cellml:units="dimensionless">2</cn>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>u_R_visco</ci>
                <apply>
                    <times/>
                    <ci>R_visco</ci>
                    <ci>v_visco</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>u_C_visco</ci>
                <apply>
                    <divide/>
                    <apply>
                        <minus/>
                        <ci>q_proximal</ci>
                        <ci>q_distal</ci>
                    </apply>
                    <ci>C</ci>
                </apply>
            </apply>
        </math>
    </component>
</model>