- Author:
- mikec <devnull@localhost>
- Date:
- 2015-03-18 15:06:52+13:00
- Desc:
- 1) Fixed some minor structural issues in all 3 NFAT models (Shen, Tomida and Dual Protocol).
2) Incorporated annotation work done by Rory Lynch.
This model seems to have been adjusted since I first submitted it, so I don't know for sure
if it still behaves properly. This commit has not been 'regression tested' in any way.
- Permanent Source URI:
- http://models.cellml.org/workspace/cooling_hunter_crampin_2009/rawfile/6038bb1d88ec1229cc2541bd89e06608fd9259f7/NFATMyocyte_DualProtocol_Submodel.cellml
<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" cmeta:id="NFATMyocyte_DualProtocol" name="NFATMyocyte_DualProtocol">
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="calcium_DualProtocol.cellml">
<component component_ref="calcium" name="calcium"/>
</import>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="calcineurin_DualProtocol.cellml">
<component component_ref="calcineurin" name="calcineurin"/>
</import>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="NFATCycling_DualProtocol.cellml">
<component component_ref="NFAT_Cycling" name="NFAT_Cycling"/>
</import>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="">
<dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/" rdf:parseType="Resource">
<vCard:N xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<vCard:Family>Cooling</vCard:Family>
<vCard:Given>Michael</vCard:Given>
</vCard:N>
<vCard:ORG xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<vCard:Orgname>Auckland Bioengineering Institute</vCard:Orgname>
<vCard:Orgunit>University of Auckland</vCard:Orgunit>
</vCard:ORG>
<vCard:EMAIL xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<rdf:value>m.cooling@auckland.ac.nz</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
</vCard:EMAIL>
</dc:creator>
<dc:title xmlns:dc="http://purl.org/dc/elements/1.1/">Sensitivity of NFAT Cycling to Cytosolic Calcium Concentration: Implications for Hypertrophic Signals in Cardiac Myocytes (Dual Calcium Protocol)</dc:title>
</rdf:Description>
<rdf:Description rdf:about="#NFATMyocyte_DualProtocol">
<bqs:reference xmlns:bqs="http://www.cellml.org/bqs/1.0#" rdf:parseType="Resource">
<bqs:JournalArticle rdf:parseType="Resource">
<dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">
<rdf:Seq>
<rdf:li rdf:parseType="Resource">
<vCard:N xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<vCard:Family>Cooling</vCard:Family>
<vCard:Given>Mike</vCard:Given>
</vCard:N>
<vCard:EMAIL xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<rdf:value>m.cooling@auckland.ac.nz</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
</vCard:EMAIL>
<vCard:ORG xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<vCard:Orgname>Auckland Bioengineering Institute</vCard:Orgname>
<vCard:Orgunit>University of Auckland</vCard:Orgunit>
</vCard:ORG>
</rdf:li>
<rdf:li rdf:parseType="Resource">
<vCard:N xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<vCard:Family>Hunter</vCard:Family>
<vCard:Given>Peter</vCard:Given>
</vCard:N>
<vCard:EMAIL xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<rdf:value>p.hunter@auckland.ac.nz</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
</vCard:EMAIL>
<vCard:ORG xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<vCard:Orgname>Auckland Bioengineering Institute</vCard:Orgname>
<vCard:Orgunit>University of Auckland</vCard:Orgunit>
</vCard:ORG>
</rdf:li>
<rdf:li rdf:parseType="Resource">
<vCard:N xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<vCard:Family>Crampin</vCard:Family>
<vCard:Given>Edmund</vCard:Given>
</vCard:N>
<vCard:EMAIL xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<rdf:value>e.crampin@auckland.ac.nz</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
</vCard:EMAIL>
<vCard:ORG xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
<vCard:Orgname>Auckland Bioengineering Institute</vCard:Orgname>
<vCard:Orgunit>University of Auckland</vCard:Orgunit>
</vCard:ORG>
</rdf:li>
</rdf:Seq>
</dc:creator>
<dc:title xmlns:dc="http://purl.org/dc/elements/1.1/">Sensitivity of NFAT Cycling to Cytosolic Calcium Concentration: Implications for Hypertrophic Signals in Cardiac Myocytes</dc:title>
<bqs:volume>96</bqs:volume>
<bqs:first_page>2095</bqs:first_page>
<bqs:last_page>2104</bqs:last_page>
<bqs:Journal rdf:parseType="Resource">
<dc:title xmlns:dc="http://purl.org/dc/elements/1.1/">Biophysical Journal</dc:title>
</bqs:Journal>
<dcterms:issued xmlns:dcterms="http://purl.org/dc/terms/" rdf:parseType="Resource">
<dcterms:W3CDTF>2009-00-00 00:00</dcterms:W3CDTF>
</dcterms:issued>
</bqs:JournalArticle>
</bqs:reference>
<bqs:reference xmlns:bqs="http://www.cellml.org/bqs/1.0#" rdf:parseType="Resource">
<dc:subject xmlns:dc="http://purl.org/dc/elements/1.1/" rdf:parseType="Resource">
<bqs:subject_type>keyword</bqs:subject_type>
<rdf:value>
<rdf:Bag>
<rdf:li>Signal Transduction</rdf:li>
<rdf:li>Calcium Dynamics</rdf:li>
<rdf:li>Gene Regulation</rdf:li>
<rdf:li>Excitation-Transcription Coupling</rdf:li>
<rdf:li>NFAT</rdf:li>
</rdf:Bag>
</rdf:value>
</dc:subject>
</bqs:reference>
</rdf:Description>
</rdf:RDF>
<!--
*******************************************************
*** U N I T S ***
*******************************************************
-->
<units name="s">
<unit units="second"/>
</units>
<units name="nM">
<unit prefix="nano" units="mole"/>
<unit exponent="-1" units="liter"/>
</units>
<!--
*********************************************************
*** C O M P O N E N T S ***
*********************************************************
-->
<component name="environment">
<variable cmeta:id="environment_t" name="t" private_interface="out" units="s"/>
</component>
<component name="geometry">
<variable initial_value="50" name="Ccn" private_interface="out" units="dimensionless"/>
<variable public_interface="in" name="t" private_interface="out" units="s"/>
</component>
<component name="NFAT_Cycling_interface">
<variable name="nuclearNFAT" units="nM"/>
<variable name="NFATN_n" public_interface="in" units="nM"/>
<variable name="NFATp_n" public_interface="in" units="nM"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>nuclearNFAT</ci>
<apply>
<plus/>
<ci>NFATN_n</ci>
<ci>NFATp_n</ci>
</apply>
</apply>
</math>
</component>
<group>
<relationship_ref relationship="encapsulation"/>
<component_ref component="environment">
<component_ref component="geometry">
<component_ref component="calcium"/>
<component_ref component="calcineurin"/>
<component_ref component="NFAT_Cycling"/>
<component_ref component="NFAT_Cycling_interface"/>
</component_ref>
</component_ref>
</group>
<connection>
<map_components component_1="environment" component_2="geometry"/>
<map_variables variable_1="t" variable_2="t"/>
</connection>
<connection>
<map_components component_1="geometry" component_2="calcium"/>
<map_variables variable_1="t" variable_2="t"/>
</connection>
<connection>
<map_components component_1="geometry" component_2="calcineurin"/>
<map_variables variable_1="t" variable_2="t"/>
</connection>
<connection>
<map_components component_1="geometry" component_2="NFAT_Cycling"/>
<map_variables variable_1="Ccn" variable_2="Ccn"/>
<map_variables variable_1="t" variable_2="t"/>
</connection>
<connection>
<map_components component_1="calcium" component_2="calcineurin"/>
<map_variables variable_1="Ca" variable_2="Ca"/>
</connection>
<connection>
<map_components component_1="calcineurin" component_2="NFAT_Cycling"/>
<map_variables variable_1="act_N" variable_2="act_N"/>
<map_variables variable_1="Ntot" variable_2="Ntot"/>
</connection>
<connection>
<map_components component_1="NFAT_Cycling_interface" component_2="NFAT_Cycling"/>
<map_variables variable_1="NFATN_n" variable_2="NFATN_n"/>
<map_variables variable_1="NFATp_n" variable_2="NFATp_n"/>
</connection>
</model>
