Location: Cooling, Hunter, Crampin, 2009 @ 6038bb1d88ec / NFATMyocyte_ShenProtocol_Submodel.session.xml

Author:
mikec <devnull@localhost>
Date:
2015-03-18 15:06:52+13:00
Desc:
1) Fixed some minor structural issues in all 3 NFAT models (Shen, Tomida and Dual Protocol). 2) Incorporated annotation work done by Rory Lynch. This model seems to have been adjusted since I first submitted it, so I don't know for sure if it still behaves properly. This commit has not been 'regression tested' in any way.
Permanent Source URI:
http://models.cellml.org/workspace/cooling_hunter_crampin_2009/rawfile/6038bb1d88ec1229cc2541bd89e06608fd9259f7/NFATMyocyte_ShenProtocol_Submodel.session.xml

<?xml version="1.0"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"><rdf:Description rdf:nodeID="n1"><rdf:first><rdf:Description rdf:nodeID="n2"/></rdf:first><rdf:rest><rdf:Description rdf:nodeID="n3"/></rdf:rest></rdf:Description><rdf:Description rdf:nodeID="n4"><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#099999</colour><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n5"/></variable><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n6"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph2"><activegraph xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n7"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n8"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="NFATMyocyte_ShenProtocol_Submodel.cellml#environment_t"/></variable></rdf:Description><rdf:Description rdf:nodeID="n9"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="NFATMyocyte_ShenProtocol_Submodel.cellml#environment_t"/></variable></rdf:Description><rdf:Description rdf:about="NFATMyocyte_ShenProtocol_Submodel.cellml"><derivedmodels xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n10"/></derivedmodels><modelfrozen xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</modelfrozen><modelname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">NFATMyocyte_ShenProtocol</modelname><modelname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">NFATMyocyte_ShenProtocol</modelname><derivedmodels xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n10"/></derivedmodels><modelfrozen xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</modelfrozen></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph3"><activegraph xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n11"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n7"><traces xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:nodeID="n12"/></traces><graphname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">Clickable SVG: Click elements below to toggle traces above</graphname>
<externalurl xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">cooling_2009nfat.xul</externalurl>
<externalurl xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">cooling_2009nfat.xul</externalurl>
<decoration xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#none"/></decoration><graphname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">Clickable SVG: Click elements below to toggle traces above</graphname><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling></rdf:Description><rdf:Description rdf:nodeID="n13"><rdf:first><rdf:Description rdf:nodeID="n14"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n15"><rdf:first><rdf:Description rdf:nodeID="n16"/></rdf:first><rdf:rest><rdf:Description rdf:nodeID="n17"/></rdf:rest></rdf:Description><rdf:Description rdf:nodeID="n18"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="NFATMyocyte_ShenProtocol_Submodel.cellml#environment_t"/></variable></rdf:Description><rdf:Description rdf:nodeID="n19"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="#calcium_Ca"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_sel_graph3"><activegraph xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n11"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n20"><rdf:first><rdf:Description rdf:nodeID="n1"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph1"><activegraph xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n21"/></activegraph></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/loadedModels"><rdf:_1><rdf:Description rdf:about="NFATMyocyte_ShenProtocol_Submodel.cellml"/></rdf:_1></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/displayGraphs"><rdf:first><rdf:Description rdf:nodeID="n22"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_key_graph1"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter><splitterState_nextHeight xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">0</splitterState_nextHeight></rdf:Description><rdf:Description rdf:nodeID="n23"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="#NFAT_Cycling_NFATN_c"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_key_graph3"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter><splitterState_nextHeight xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">0</splitterState_nextHeight></rdf:Description><rdf:Description rdf:nodeID="n2"><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#099999</colour><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n24"/></variable><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n23"/></variable></rdf:Description><rdf:Description rdf:nodeID="n25"><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#e9c012</colour><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n26"/></variable><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n19"/></variable></rdf:Description><rdf:Description rdf:nodeID="n22"><rdf:first><rdf:Description rdf:nodeID="n11"/></rdf:first><rdf:rest><rdf:Description rdf:nodeID="n27"/></rdf:rest></rdf:Description><rdf:Description rdf:nodeID="n14"><rdf:first><rdf:Description rdf:nodeID="n28"/></rdf:first><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest></rdf:Description><rdf:Description rdf:nodeID="n29"><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#c9d2c4</colour><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n30"/></variable><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n31"/></variable></rdf:Description><rdf:Description rdf:nodeID="n32"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="#calcineurin_n"/></variable></rdf:Description><rdf:Description rdf:nodeID="n26"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="NFATMyocyte_ShenProtocol_Submodel.cellml#environment_t"/></variable></rdf:Description><rdf:Description rdf:nodeID="n33"><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#3291ac</colour><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n18"/></variable><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n34"/></variable></rdf:Description><rdf:Description rdf:nodeID="n35"><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#89d93a</colour><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n8"/></variable><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n36"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph3"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter><splitterState_nextHeight xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">0</splitterState_nextHeight></rdf:Description><rdf:Description rdf:nodeID="n36"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="#NFAT_Cycling_NFATN_n"/></variable></rdf:Description><rdf:Description rdf:nodeID="n27"><rdf:first><rdf:Description rdf:nodeID="n7"/></rdf:first><rdf:rest><rdf:Description rdf:nodeID="n37"/></rdf:rest></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_key_graph2"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter><splitterState_nextHeight xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">0</splitterState_nextHeight></rdf:Description><rdf:Description rdf:nodeID="n12"><rdf:first><rdf:Description rdf:nodeID="n38"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/intergraph2"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:nodeID="n37"><rdf:first><rdf:Description rdf:nodeID="n21"/></rdf:first><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest></rdf:Description><rdf:Description rdf:nodeID="n38"><rdf:first><rdf:Description rdf:nodeID="n4"/></rdf:first><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest></rdf:Description><rdf:Description rdf:nodeID="n31"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="#NFAT_Cycling_NFATp_c"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/loadedModels"><rdf:_2><rdf:Description rdf:about="NFATMyocyte_ShenProtocol_Submodel.cellml"/></rdf:_2></rdf:Description><rdf:Description rdf:nodeID="n39"><rdf:first><rdf:Description rdf:nodeID="n33"/></rdf:first><rdf:rest><rdf:Description rdf:nodeID="n15"/></rdf:rest></rdf:Description><rdf:Description rdf:nodeID="n34"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="#NFAT_Cycling_NFATp_n"/></variable></rdf:Description><rdf:Description rdf:nodeID="n28"><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#099999</colour><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n40"/></variable><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n41"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_sel_graph2"><activegraph xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n7"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n30"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="NFATMyocyte_ShenProtocol_Submodel.cellml#environment_t"/></variable></rdf:Description><rdf:Description rdf:nodeID="n17"><rdf:first><rdf:Description rdf:nodeID="n25"/></rdf:first><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest></rdf:Description><rdf:Description rdf:nodeID="n11"><traces xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:nodeID="n13"/></traces><graphname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">Untitled</graphname><decoration xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#none"/></decoration><graphname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">Untitled</graphname><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling></rdf:Description><rdf:Description rdf:nodeID="n3"><rdf:first><rdf:Description rdf:nodeID="n35"/></rdf:first><rdf:rest><rdf:Description rdf:nodeID="n42"/></rdf:rest></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph2"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter><splitterState_nextHeight xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">0</splitterState_nextHeight></rdf:Description><rdf:Description rdf:nodeID="n24"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="NFATMyocyte_ShenProtocol_Submodel.cellml#environment_t"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/displayGraphs"><rdf:first><rdf:Description rdf:nodeID="n22"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n21"><traces xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:nodeID="n20"/></traces><graphname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">Trace Elements: Clickable traces against time (s)</graphname><decoration xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#none"/></decoration><graphname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">Trace Elements: Clickable traces against time (s)</graphname><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_sel_graph1"><activegraph xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n21"/></activegraph></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/intergraph2"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph1"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter><splitterState_nextHeight xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">0</splitterState_nextHeight></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/modlayoutsplit"><splitterState_collapsedBefore xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedBefore><splitterState_prevWidth xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">55</splitterState_prevWidth></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/modlayoutsplit"><splitterState_nextWidth xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">1203</splitterState_nextWidth><splitterState_prevWidth xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">55</splitterState_prevWidth><splitterState_collapsedBefore xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedBefore><splitterState_nextWidth xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">1203</splitterState_nextWidth></rdf:Description><rdf:Description rdf:nodeID="n42"><rdf:first><rdf:Description rdf:nodeID="n29"/></rdf:first><rdf:rest><rdf:Description rdf:nodeID="n39"/></rdf:rest></rdf:Description><rdf:Description rdf:nodeID="n16"><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#660f82</colour><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n9"/></variable><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n32"/></variable></rdf:Description></rdf:RDF>