- Author:
- Catherine Lloyd <c.lloyd@auckland.ac.nz>
- Date:
- 2010-01-07 13:19:20+13:00
- Desc:
- Removed redundant (duplicate) .png image and corrected the name of the .svg and .ai files. Model curation: fixed documentation, metadata and corrected units and initial conditions (together with Ethan Choi).
- Permanent Source URI:
- http://models.cellml.org/workspace/perelson_neumann_markowitz_leonard_ho_1996/rawfile/969e0fd78645025a63ad666ffe792084f3cf632a/perelson_neumann_markowitz_leonard_ho_1996.cellml
<?xml version="1.0"?>
<!-- FILE : perelson_neumann_markowitz_leonard_ho_1996.cellml
CREATED : 3rd December 2003
LAST MODIFIED : 6th January 2010
AUTHOR : Catherine Lloyd
Bioengineering Institute
The University of Auckland
MODEL STATUS : This model conforms to the CellML 1.0 Specification released on
10th August 2001, and the 16/1/02 CellML Metadata 1.0 Specification.
DESCRIPTION : This file contains a CellML description of Perelson et al.'s 1996 mathematical model of HIV-1 dynamics in vivo.
CHANGES:
-->
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<article>
<articleinfo>
<title>HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time</title>
<author>
<firstname>Catherine</firstname>
<surname>Lloyd</surname>
<affiliation>
<shortaffil>Auckland Bioengineering Institute, The University of Auckland</shortaffil>
</affiliation>
</author>
</articleinfo>
<section id="sec_status">
<title>Model Status</title>
<para>This CellML model represents the second model in the published paper (which includes the effects of treatment with ritonavir). The model runs in both COR and PCEnv, the units have been checked and they are consistent. The simulation output from the CellML model looks reasonable, however we were unable to check it against the original model results as the paper does not contain any simulation graphs. Please note that the value of the initial condition of T_star and the parameters k and N were not definied in the paper so these have been set to 0, 2.4e-5, and 774 respectively, according to the values which were defined in Perelson et al. 1993.</para>
</section>
<sect1 id="sec_structure">
<title>Model Structure</title>
<para>ABSTRACT: A new mathematical model was used to analyze a detailed set of human immunodeficiency virus-type 1 (HIV-1) viral load data collected from five infected individuals after the administration of a potent inhibitor of HIV-1 protease. Productively infected cells were estimated to have, on average, a life-span of 2.2 days (half-life t 1/2 = 1.6 days), and plasma virions were estimated to have a mean life-span of 0.3 days (t 1/2 = 0.24 days). The estimated average total HIV-1 production was 10.3 x 10(9) virions per day, which is substantially greater than previous minimum estimates. The results also suggest that the minimum duration of the HIV-1 life cycle in vivo is 1.2 days on average, and that the average HIV-1 generation time--defined as the time from release of a virion until it infects another cell and causes the release of a new generation of viral particles--is 2.6 days. These findings on viral dynamics provide not only a kinetic picture of HIV-1 pathogenesis, but also theoretical principles to guide the development of treatment strategies.</para>
<para>The original paper reference is cited below:</para>
<para>HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time, Alan S. Perelson, Avidan U. Neumann, Martin Markowitz, John M. Leonard, and David D. Ho, 1996, <emphasis>Science</emphasis>, 271, 1582-1586. <ulink url="http://www.ncbi.nlm.nih.gov/pubmed/8599114">PubMed ID: 8599114</ulink>
</para>
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<title>cell diagram</title>
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<caption>Schematic diagram summarising the dynamics of an HIV-1 infection <emphasis>in vivo</emphasis>.</caption>
</informalfigure>
</sect1>
</article>
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<!-- metadata -->
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqs="http://www.cellml.org/bqs/1.0#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
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HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time
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<dcterms:W3CDTF>1996-03-15</dcterms:W3CDTF>
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