# Generated Code

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The raw code is available.

# Size of variable arrays: sizeAlgebraic = 1 sizeStates = 1 sizeConstants = 6 from math import * from numpy import * def createLegends(): legend_states = [""] * sizeStates legend_rates = [""] * sizeStates legend_algebraic = [""] * sizeAlgebraic legend_voi = "" legend_constants = [""] * sizeConstants legend_voi = "time in component interface (ms)" legend_constants[0] = "lambda in component interface (dimensionless)" legend_constants[1] = "Ca_max in component interface (mM)" legend_constants[2] = "beta in component interface (dimensionless)" legend_constants[3] = "c50 in component interface (mM)" legend_constants[4] = "h in component interface (dimensionless)" legend_constants[5] = "T_ref in component interface (kPa)" legend_algebraic[0] = "T in component active_contraction (kPa)" legend_states[0] = "Ca_actn in component interface (mM)" legend_rates[0] = "d/dt Ca_actn in component interface (mM)" return (legend_states, legend_algebraic, legend_voi, legend_constants) def initConsts(): constants = [0.0] * sizeConstants; states = [0.0] * sizeStates; constants[0] = 1 constants[1] = 1 constants[2] = 1.45 constants[3] = 0.5 constants[4] = 3 constants[5] = 100 states[0] = 0 return (states, constants) def computeRates(voi, states, constants): rates = [0.0] * sizeStates; algebraic = [0.0] * sizeAlgebraic rates[0] = voi*constants[1] return(rates) def computeAlgebraic(constants, states, voi): algebraic = array([[0.0] * len(voi)] * sizeAlgebraic) states = array(states) voi = array(voi) algebraic[0] = ((constants[1]*(power(states[0], constants[4])))/(power(states[0], constants[4])+power(constants[3], constants[4])))*constants[5]*(1.00000+constants[2]*(constants[0]-1.00000)) return algebraic def solve_model(): """Solve model with ODE solver""" from scipy.integrate import ode # Initialise constants and state variables (init_states, constants) = initConsts() # Set timespan to solve over voi = linspace(0, 10, 500) # Construct ODE object to solve r = ode(computeRates) r.set_integrator('vode', method='bdf', atol=1e-06, rtol=1e-06, max_step=1) r.set_initial_value(init_states, voi[0]) r.set_f_params(constants) # Solve model states = array([[0.0] * len(voi)] * sizeStates) states[:,0] = init_states for (i,t) in enumerate(voi[1:]): if r.successful(): r.integrate(t) states[:,i+1] = r.y else: break # Compute algebraic variables algebraic = computeAlgebraic(constants, states, voi) return (voi, states, algebraic) def plot_model(voi, states, algebraic): """Plot variables against variable of integration""" import pylab (legend_states, legend_algebraic, legend_voi, legend_constants) = createLegends() pylab.figure(1) pylab.plot(voi,vstack((states,algebraic)).T) pylab.xlabel(legend_voi) pylab.legend(legend_states + legend_algebraic, loc='best') pylab.show() if __name__ == "__main__": (voi, states, algebraic) = solve_model() plot_model(voi, states, algebraic)