Model Mathematics

Component: NatP

$ddtimeNatP=v1+v3-v2$

Component: MisP

$ddtimeMisP=v2+v5+v23-v3+v4+2⁢v39+v40+v49+v50+v51+v52+v53+v54+v55+v56$

Component: Ub

$ddtimeUb=v16+v17+v18+v19+v20+v21+v22+v23+v29+v30+v31+v32+v33+4⁢v34+5⁢v35+6⁢v36+7⁢v37+8⁢v38-v6$

Component: E1

$ddtimeE1=v7-v6$

Component: E2

$ddtimeE2=v8+v9+v10+v11+v12+v13+v14+v15-v7$

Component: E3

$ddtimeE3=v5+v8-v4$

Component: DUB

$ddtimeDUB=v16+v17+v18+v19+v20+v21+v22+v23+v29+v30+v31+v32+v33-v16+v17+v18+v19+v20+v21+v22+v23+v29+v30+v31+v32+v33$

Component: Proteasome

$ddtimeProteasome=v29+v34+v35+v36+v37+v38-v24+v25+v26+v27+v28+v94$

Component: ROS

$ddtimeROS=v2-v2$

Component: E1_Ub

$ddtimeE1_Ub=v6-v7$

Component: E2_Ub

$ddtimeE2_Ub=v7-v8-v9-v10-v11-v12-v13-v14-v15$

Component: E3_MisP

$ddtimeE3_MisP=v4-v5-v8$

Component: MisP_Ub

$ddtimeMisP_Ub=v8+v22-v9+v23+2⁢v41+v49+v57+v65+v66+v67+v68+v69+v70+v71$

Component: MisP_Ub2

$ddtimeMisP_Ub2=v9+v21-v10+v22+2⁢v42+v50+v58+v65+v72+v73+v74+v75+v76+v77$

Component: MisP_Ub3

$ddtimeMisP_Ub3=v10+v20+v29-v11+v21+2⁢v43+v51+v59+v66+v72+v78+v79+v80+v81+v82$

Component: MisP_Ub4

$ddtimeMisP_Ub4=v11+v19-v12+v20+v24+2⁢v44+v52+v60+v67+v73+v78+v83+v84+v85+v86$

Component: MisP_Ub5

$ddtimeMisP_Ub5=v12+v18-v13+v19+v25+2⁢v45+v53+v61+v68+v74+v79+v83+v87+v88+v89$

Component: MisP_Ub6

$ddtimeMisP_Ub6=v13+v17-v14+v18+v26+2⁢v46+v54+v62+v69+v75+v80+v84+v87+v90+v91$

Component: MisP_Ub7

$ddtimeMisP_Ub7=v14+v16-v15+v17+v27+2⁢v47+v55+v63+v70+v76+v81+v85+v88+v90+v92$

Component: MisP_Ub8

$ddtimeMisP_Ub8=v15-v16+v28+2⁢v48+v56+v64+v71+v77+v82+v86+v89+v91+v92$

Component: MisP_Ub4_Proteasome

$ddtimeMisP_Ub4_Proteasome=v24+v30-v29+v34$

Component: MisP_Ub5_Proteasome

$ddtimeMisP_Ub5_Proteasome=v25+v31-v30+v35$

Component: MisP_Ub6_Proteasome

$ddtimeMisP_Ub6_Proteasome=v26+v32-v31+v36$

Component: MisP_Ub7_Proteasome

$ddtimeMisP_Ub7_Proteasome=v27+v33-v32+v37$

Component: MisP_Ub8_Proteasome

$ddtimeMisP_Ub8_Proteasome=v28-v33+v38$

Component: ATP

$ddtimeATP=0$

$ddtimeADP=0$

Component: AMP

$ddtimeAMP=0$

Component: degUb4

$ddtimedegUb4=v34$

Component: degUb5

$ddtimedegUb5=v35$

Component: degUb6

$ddtimedegUb6=v36$

Component: degUb7

$ddtimedegUb7=v37$

Component: degUb8

$ddtimedegUb8=v38$

Component: MisP_total

$ddtimeMisP_total=v2$

Component: NatP_refolded

$ddtimeNatP_refolded=v3$

Component: AggP

$ddtimeAggP=v39+2⁢v40+v41+v42+v43+v44+v45+v46+v47+v48+v49+v50+v51+v52+v53+v54+v55+v56+2⁢v57+2⁢v58+2⁢v59+2⁢v60+2⁢v61+2⁢v62+2⁢v63+2⁢v64+v65+v66+v67+v68+v69+v70+v71+v72+v73+v74+v75+v76+v77+v78+v79+v80+v81+v82+v83+v84+v85+v86+v87+v88+v89+v90+v91+v92-v40+v57+v58+v59+v60+v61+v62+v63+v64+v93+v94$

Component: SeqAggP

$ddtimeSeqAggP=v93$

Component: AggP_Proteasome

$ddtimeAggP_Proteasome=v94$

Component: v1

$v1=k1$

Component: v2

$v2=k2⁢NatP⁢ROS$

Component: v3

$v3=k3⁢MisP$

Component: v4

$v4=k61⁢E3⁢MisP$

Component: v5

$v5=k61r⁢E3_MisP$

Component: v6

$v6=k62⁢E1⁢Ub⁢ATP5000+ATP$

Component: v7

$v7=k63⁢E2⁢E1_Ub$

Component: v8

$v8=k64⁢E2_Ub⁢E3_MisP$

Component: v9

$v9=k65⁢E2_Ub⁢MisP_Ub$

Component: v10

$v10=k65⁢E2_Ub⁢MisP_Ub2$

Component: v11

$v11=k65⁢E2_Ub⁢MisP_Ub3$

Component: v12

$v12=k65⁢E2_Ub⁢MisP_Ub4$

Component: v13

$v13=k65⁢E2_Ub⁢MisP_Ub5$

Component: v14

$v14=k65⁢E2_Ub⁢MisP_Ub6$

Component: v15

$v15=k65⁢E2_Ub⁢MisP_Ub7$

Component: v16

$v16=k66⁢DUB⁢MisP_Ub8$

Component: v17

$v17=k66⁢DUB⁢MisP_Ub7$

Component: v18

$v18=k66⁢DUB⁢MisP_Ub6$

Component: v19

$v19=k66⁢DUB⁢MisP_Ub5$

Component: v20

$v20=k66⁢DUB⁢MisP_Ub4$

Component: v21

$v21=k66⁢DUB⁢MisP_Ub3$

Component: v22

$v22=k66⁢DUB⁢MisP_Ub2$

Component: v23

$v23=k66⁢DUB⁢MisP_Ub$

Component: v24

$v24=k67⁢MisP_Ub4⁢Proteasome$

Component: v25

$v25=k67⁢MisP_Ub5⁢Proteasome$

Component: v26

$v26=k67⁢MisP_Ub6⁢Proteasome$

Component: v27

$v27=k67⁢MisP_Ub7⁢Proteasome$

Component: v28

$v28=k67⁢MisP_Ub8⁢Proteasome$

Component: v29

$v29=k68⁢DUB⁢MisP_Ub4_Proteasome$

Component: v30

$v30=k68⁢DUB⁢MisP_Ub5_Proteasome$

Component: v31

$v31=k68⁢DUB⁢MisP_Ub6_Proteasome$

Component: v32

$v32=k68⁢DUB⁢MisP_Ub7_Proteasome$

Component: v33

$v33=k68⁢DUB⁢MisP_Ub8_Proteasome$

Component: v34

$v34=k69⁢MisP_Ub4_Proteasome⁢ATP5000+ATP$

Component: v35

$v35=k69⁢MisP_Ub5_Proteasome⁢ATP5000+ATP$

Component: v36

$v36=k69⁢MisP_Ub6_Proteasome⁢ATP5000+ATP$

Component: v37

$v37=k69⁢MisP_Ub7_Proteasome⁢ATP5000+ATP$

Component: v38

$v38=k69⁢MisP_Ub8_Proteasome⁢ATP5000+ATP$

Component: v39

$v39=k71⁢MisP⁢MisP-12$

Component: v40

$v40=k71⁢MisP⁢AggP$

Component: v41

$v41=k72⁢MisP_Ub⁢MisP_Ub-12$

Component: v42

$v42=k72⁢MisP_Ub2⁢MisP_Ub2-12$

Component: v43

$v43=k72⁢MisP_Ub3⁢MisP_Ub3-12$

Component: v44

$v44=k72⁢MisP_Ub4⁢MisP_Ub4-12$

Component: v45

$v45=k72⁢MisP_Ub5⁢MisP_Ub5-12$

Component: v46

$v46=k72⁢MisP_Ub6⁢MisP_Ub6-12$

Component: v47

$v47=k72⁢MisP_Ub7⁢MisP_Ub7-12$

Component: v48

$v48=k72⁢MisP_Ub8⁢MisP_Ub8-12$

Component: v49

$v49=k72⁢MisP⁢MisP_Ub$

Component: v50

$v50=k72⁢MisP⁢MisP_Ub2$

Component: v51

$v51=k72⁢MisP⁢MisP_Ub3$

Component: v52

$v52=k72⁢MisP⁢MisP_Ub4$

Component: v53

$v53=k72⁢MisP⁢MisP_Ub5$

Component: v54

$v54=k72⁢MisP⁢MisP_Ub6$

Component: v55

$v55=k72⁢MisP⁢MisP_Ub7$

Component: v56

$v56=k72⁢MisP⁢MisP_Ub8$

Component: v57

$v57=k72⁢AggP⁢MisP_Ub$

Component: v58

$v58=k72⁢AggP⁢MisP_Ub2$

Component: v59

$v59=k72⁢AggP⁢MisP_Ub3$

Component: v60

$v60=k72⁢AggP⁢MisP_Ub4$

Component: v61

$v61=k72⁢AggP⁢MisP_Ub5$

Component: v62

$v62=k72⁢AggP⁢MisP_Ub6$

Component: v63

$v63=k72⁢AggP⁢MisP_Ub7$

Component: v64

$v64=k72⁢AggP⁢MisP_Ub8$

Component: v65

$v65=k72⁢MisP_Ub⁢MisP_Ub2$

Component: v66

$v66=k72⁢MisP_Ub⁢MisP_Ub3$

Component: v67

$v67=k72⁢MisP_Ub⁢MisP_Ub4$

Component: v68

$v68=k72⁢MisP_Ub⁢MisP_Ub5$

Component: v69

$v69=k72⁢MisP_Ub⁢MisP_Ub6$

Component: v70

$v70=k72⁢MisP_Ub⁢MisP_Ub7$

Component: v71

$v71=k72⁢MisP_Ub⁢MisP_Ub8$

Component: v72

$v72=k72⁢MisP_Ub2⁢MisP_Ub3$

Component: v73

$v73=k72⁢MisP_Ub2⁢MisP_Ub4$

Component: v74

$v74=k72⁢MisP_Ub2⁢MisP_Ub5$

Component: v75

$v75=k72⁢MisP_Ub2⁢MisP_Ub6$

Component: v76

$v76=k72⁢MisP_Ub2⁢MisP_Ub7$

Component: v77

$v77=k72⁢MisP_Ub2⁢MisP_Ub8$

Component: v78

$v78=k72⁢MisP_Ub3⁢MisP_Ub4$

Component: v79

$v79=k72⁢MisP_Ub3⁢MisP_Ub5$

Component: v80

$v80=k72⁢MisP_Ub3⁢MisP_Ub6$

Component: v81

$v81=k72⁢MisP_Ub3⁢MisP_Ub7$

Component: v82

$v82=k72⁢MisP_Ub3⁢MisP_Ub8$

Component: v83

$v83=k72⁢MisP_Ub4⁢MisP_Ub5$

Component: v84

$v84=k72⁢MisP_Ub4⁢MisP_Ub6$

Component: v85

$v85=k72⁢MisP_Ub4⁢MisP_Ub7$

Component: v86

$v86=k72⁢MisP_Ub4⁢MisP_Ub8$

Component: v87

$v87=k72⁢MisP_Ub5⁢MisP_Ub6$

Component: v88

$v88=k72⁢MisP_Ub5⁢MisP_Ub7$

Component: v89

$v89=k72⁢MisP_Ub5⁢MisP_Ub8$

Component: v90

$v90=k72⁢MisP_Ub6⁢MisP_Ub7$

Component: v91

$v91=k72⁢MisP_Ub6⁢MisP_Ub8$

Component: v92

$v92=k72⁢MisP_Ub7⁢MisP_Ub8$

Component: v93

$v93=k73⁢AggP$

Component: v94

$v94=k74⁢AggP⁢Proteasome$

Component: kinetic_parameters

Source
Derived from workspace Proctor, 2007 at changeset bae5b007d24f.
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