/*
   There are a total of 4 entries in the algebraic variable array.
   There are a total of 20 entries in each of the rate and state variable arrays.
   There are a total of 26 entries in the constant variable array.
 */
/*
 * VOI is time in component environment (hour).
 * STATES[0] is S_0 in component S_0 (dimensionless).
 * CONSTANTS[15] is R_0 in component R (first_order_rate_constant).
 * CONSTANTS[16] is u_s in component kinetic_parameters (first_order_rate_constant).
 * ALGEBRAIC[0] is phi in component phi (first_order_rate_constant).
 * STATES[1] is S_1 in component S_1 (dimensionless).
 * CONSTANTS[17] is R_1 in component R (first_order_rate_constant).
 * CONSTANTS[0] is epsilon_s in component kinetic_parameters (first_order_rate_constant).
 * CONSTANTS[1] is alpha in component kinetic_parameters (dimensionless).
 * CONSTANTS[2] is u in component kinetic_parameters (first_order_rate_constant).
 * STATES[2] is S_2 in component S_2 (dimensionless).
 * CONSTANTS[18] is R_2 in component R (first_order_rate_constant).
 * STATES[3] is S_3 in component S_3 (dimensionless).
 * CONSTANTS[19] is R_3 in component R (first_order_rate_constant).
 * STATES[4] is S_4 in component S_4 (dimensionless).
 * CONSTANTS[20] is R_4 in component R (first_order_rate_constant).
 * STATES[5] is S_5 in component S_5 (dimensionless).
 * CONSTANTS[21] is R_5 in component R (first_order_rate_constant).
 * STATES[6] is S_6 in component S_6 (dimensionless).
 * CONSTANTS[22] is R_6 in component R (first_order_rate_constant).
 * STATES[7] is S_7 in component S_7 (dimensionless).
 * CONSTANTS[23] is R_7 in component R (first_order_rate_constant).
 * STATES[8] is S_8 in component S_8 (dimensionless).
 * CONSTANTS[24] is R_8 in component R (first_order_rate_constant).
 * STATES[9] is M_0 in component M_0 (dimensionless).
 * CONSTANTS[3] is epsilon_m in component kinetic_parameters (first_order_rate_constant).
 * CONSTANTS[25] is u_m in component kinetic_parameters (first_order_rate_constant).
 * STATES[10] is M_1 in component M_1 (dimensionless).
 * STATES[11] is M_1_2 in component M_1 (dimensionless).
 * STATES[12] is M_2 in component M_2 (dimensionless).
 * STATES[13] is M_3 in component M_3 (dimensionless).
 * STATES[14] is M_4 in component M_4 (dimensionless).
 * STATES[15] is M_5 in component M_5 (dimensionless).
 * STATES[16] is M_6 in component M_6 (dimensionless).
 * STATES[17] is M_7 in component M_7 (dimensionless).
 * STATES[18] is M_8 in component M_8 (dimensionless).
 * CONSTANTS[4] is r_0 in component R (first_order_rate_constant).
 * CONSTANTS[5] is r_1 in component R (first_order_rate_constant).
 * CONSTANTS[6] is r_2 in component R (first_order_rate_constant).
 * CONSTANTS[7] is r_3 in component R (first_order_rate_constant).
 * CONSTANTS[8] is r_4 in component R (first_order_rate_constant).
 * CONSTANTS[9] is r_5 in component R (first_order_rate_constant).
 * CONSTANTS[10] is r_6 in component R (first_order_rate_constant).
 * CONSTANTS[11] is r_7 in component R (first_order_rate_constant).
 * CONSTANTS[12] is r_8 in component R (first_order_rate_constant).
 * CONSTANTS[13] is a in component kinetic_parameters (dimensionless).
 * STATES[19] is w in component w (dimensionless).
 * ALGEBRAIC[1] is total_cells in component total_cells (dimensionless).
 * ALGEBRAIC[2] is stable_total in component total_cells (dimensionless).
 * ALGEBRAIC[3] is mutant_total in component total_cells (dimensionless).
 * CONSTANTS[14] is beta in component kinetic_parameters (dimensionless).
 * RATES[0] is d/dt S_0 in component S_0 (dimensionless).
 * RATES[1] is d/dt S_1 in component S_1 (dimensionless).
 * RATES[2] is d/dt S_2 in component S_2 (dimensionless).
 * RATES[3] is d/dt S_3 in component S_3 (dimensionless).
 * RATES[4] is d/dt S_4 in component S_4 (dimensionless).
 * RATES[5] is d/dt S_5 in component S_5 (dimensionless).
 * RATES[6] is d/dt S_6 in component S_6 (dimensionless).
 * RATES[7] is d/dt S_7 in component S_7 (dimensionless).
 * RATES[8] is d/dt S_8 in component S_8 (dimensionless).
 * RATES[9] is d/dt M_0 in component M_0 (dimensionless).
 * RATES[10] is d/dt M_1 in component M_1 (dimensionless).
 * RATES[11] is d/dt M_1_2 in component M_1 (dimensionless).
 * RATES[12] is d/dt M_2 in component M_2 (dimensionless).
 * RATES[13] is d/dt M_3 in component M_3 (dimensionless).
 * RATES[14] is d/dt M_4 in component M_4 (dimensionless).
 * RATES[15] is d/dt M_5 in component M_5 (dimensionless).
 * RATES[16] is d/dt M_6 in component M_6 (dimensionless).
 * RATES[17] is d/dt M_7 in component M_7 (dimensionless).
 * RATES[18] is d/dt M_8 in component M_8 (dimensionless).
 * RATES[19] is d/dt w in component w (dimensionless).
 */
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
STATES[0] = 0.5;
STATES[1] = 0;
CONSTANTS[0] = 0.99;
CONSTANTS[1] = 0.6;
CONSTANTS[2] = 0.07;
STATES[2] = 0;
STATES[3] = 0;
STATES[4] = 0;
STATES[5] = 0;
STATES[6] = 0;
STATES[7] = 0;
STATES[8] = 0;
STATES[9] = 0.5;
CONSTANTS[3] = 0.1;
STATES[10] = 0;
STATES[11] = 0;
STATES[12] = 0;
STATES[13] = 0;
STATES[14] = 0;
STATES[15] = 0;
STATES[16] = 0;
STATES[17] = 0;
STATES[18] = 0;
CONSTANTS[4] = 0.5;
CONSTANTS[5] = 0.6;
CONSTANTS[6] = 0.7;
CONSTANTS[7] = 0.8;
CONSTANTS[8] = 0.9;
CONSTANTS[9] = 1;
CONSTANTS[10] = 1.1;
CONSTANTS[11] = 1.2;
CONSTANTS[12] = 1.3;
CONSTANTS[13] = 0.5;
STATES[19] = 0;
CONSTANTS[14] = 0.2;
CONSTANTS[15] = CONSTANTS[4];
CONSTANTS[16] =  CONSTANTS[2]*(1.00000 - ( CONSTANTS[14]*CONSTANTS[0])/1.00000);
CONSTANTS[17] =  CONSTANTS[5]*(1.00000 - CONSTANTS[13]);
CONSTANTS[18] =  CONSTANTS[6]*(1.00000 - CONSTANTS[13]);
CONSTANTS[19] =  CONSTANTS[7]*(1.00000 - CONSTANTS[13]);
CONSTANTS[20] =  CONSTANTS[8]*(1.00000 - CONSTANTS[13]);
CONSTANTS[21] =  CONSTANTS[9]*(1.00000 - CONSTANTS[13]);
CONSTANTS[22] =  CONSTANTS[10]*(1.00000 - CONSTANTS[13]);
CONSTANTS[23] =  CONSTANTS[11]*(1.00000 - CONSTANTS[13]);
CONSTANTS[24] =  CONSTANTS[12]*(1.00000 - CONSTANTS[13]);
CONSTANTS[25] =  CONSTANTS[2]*(1.00000 - ( CONSTANTS[14]*CONSTANTS[3])/1.00000);
}
void
computeRates(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
RATES[10] =  STATES[9]*1.00000;
ALGEBRAIC[0] =  ((1.00000 - CONSTANTS[16])/1.00000)*( CONSTANTS[15]*STATES[0]+ CONSTANTS[17]*STATES[1]+ CONSTANTS[18]*STATES[2]+ CONSTANTS[19]*STATES[3]+ CONSTANTS[20]*STATES[4])+ ((1.00000 - CONSTANTS[25])/1.00000)*( CONSTANTS[17]*STATES[10]+ CONSTANTS[18]*STATES[12]+ CONSTANTS[19]*STATES[13]+ CONSTANTS[20]*STATES[14]);
RATES[0] =  (( CONSTANTS[15]*STATES[0])/1.00000)*(1.00000 - CONSTANTS[16]) -  ALGEBRAIC[0]*STATES[0];
RATES[1] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[15]*STATES[0])/1.00000)*(1.00000 - CONSTANTS[0])+ (( CONSTANTS[17]*STATES[1])/1.00000)*(1.00000 - CONSTANTS[16])) -  ALGEBRAIC[0]*STATES[1];
RATES[2] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[17]*STATES[1])/1.00000)*(1.00000 - CONSTANTS[0])+ (( CONSTANTS[18]*STATES[2])/1.00000)*(1.00000 - CONSTANTS[16])) -  ALGEBRAIC[0]*STATES[2];
RATES[3] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[18]*STATES[2])/1.00000)*(1.00000 - CONSTANTS[0])+ (( CONSTANTS[19]*STATES[3])/1.00000)*(1.00000 - CONSTANTS[16])) -  ALGEBRAIC[0]*STATES[3];
RATES[4] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[19]*STATES[3])/1.00000)*(1.00000 - CONSTANTS[0])+ (( CONSTANTS[20]*STATES[4])/1.00000)*(1.00000 - CONSTANTS[16])) -  ALGEBRAIC[0]*STATES[4];
RATES[5] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[20]*STATES[4])/1.00000)*(1.00000 - CONSTANTS[0])+ (( CONSTANTS[21]*STATES[5])/1.00000)*(1.00000 - CONSTANTS[16])) -  ALGEBRAIC[0]*STATES[5];
RATES[6] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[21]*STATES[5])/1.00000)*(1.00000 - CONSTANTS[0])+ (( CONSTANTS[22]*STATES[6])/1.00000)*(1.00000 - CONSTANTS[16])) -  ALGEBRAIC[0]*STATES[6];
RATES[7] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[22]*STATES[6])/1.00000)*(1.00000 - CONSTANTS[0])+ (( CONSTANTS[23]*STATES[7])/1.00000)*(1.00000 - CONSTANTS[16])) -  ALGEBRAIC[0]*STATES[7];
RATES[8] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[23]*STATES[7])/1.00000)*(1.00000 - CONSTANTS[0])+ (( CONSTANTS[24]*STATES[8])/1.00000)*(1.00000 - CONSTANTS[16])) -  ALGEBRAIC[0]*STATES[8];
RATES[9] =  (( CONSTANTS[15]*STATES[9])/1.00000)*(1.00000 - CONSTANTS[25]) -  ALGEBRAIC[0]*STATES[9];
RATES[11] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[15]*STATES[9])/1.00000)*(1.00000 - CONSTANTS[3])+ (( CONSTANTS[17]*STATES[10])/1.00000)*(1.00000 - CONSTANTS[25])) -  ALGEBRAIC[0]*STATES[10];
RATES[12] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[17]*STATES[10])/1.00000)*(1.00000 - CONSTANTS[3])+ (( CONSTANTS[18]*STATES[12])/1.00000)*(1.00000 - CONSTANTS[25])) -  ALGEBRAIC[0]*STATES[12];
RATES[13] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[18]*STATES[12])/1.00000)*(1.00000 - CONSTANTS[3])+ (( CONSTANTS[19]*STATES[13])/1.00000)*(1.00000 - CONSTANTS[25])) -  ALGEBRAIC[0]*STATES[13];
RATES[14] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[19]*STATES[14])/1.00000)*(1.00000 - CONSTANTS[3])+ (( CONSTANTS[20]*STATES[14])/1.00000)*(1.00000 - CONSTANTS[25])) -  ALGEBRAIC[0]*STATES[14];
RATES[15] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[20]*STATES[14])/1.00000)*(1.00000 - CONSTANTS[3])+ (( CONSTANTS[21]*STATES[15])/1.00000)*(1.00000 - CONSTANTS[25])) -  ALGEBRAIC[0]*STATES[15];
RATES[16] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[21]*STATES[15])/1.00000)*(1.00000 - CONSTANTS[3])+ (( CONSTANTS[22]*STATES[16])/1.00000)*(1.00000 - CONSTANTS[25])) -  ALGEBRAIC[0]*STATES[16];
RATES[17] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[22]*STATES[16])/1.00000)*(1.00000 - CONSTANTS[3])+ (( CONSTANTS[23]*STATES[17])/1.00000)*(1.00000 - CONSTANTS[25])) -  ALGEBRAIC[0]*STATES[17];
RATES[18] = ( (( CONSTANTS[1]*CONSTANTS[2]*CONSTANTS[23]*STATES[17])/1.00000)*(1.00000 - CONSTANTS[3])+ (( CONSTANTS[24]*STATES[18])/1.00000)*((1.00000 - CONSTANTS[25])+ (( CONSTANTS[1]*CONSTANTS[2])/1.00000)*(1.00000 - CONSTANTS[3]))) -  ALGEBRAIC[0]*STATES[8];
RATES[19] =  (( (1.00000 - CONSTANTS[1])*CONSTANTS[2])/1.00000)*( (1.00000 - CONSTANTS[0])*( CONSTANTS[15]*STATES[0]+ CONSTANTS[17]*STATES[1]+ CONSTANTS[18]*STATES[2]+ CONSTANTS[19]*STATES[3]+ CONSTANTS[20]*STATES[4]+ CONSTANTS[21]*STATES[5]+ CONSTANTS[22]*STATES[6]+ CONSTANTS[23]*STATES[7]+ CONSTANTS[24]*STATES[8])+ (1.00000 - CONSTANTS[3])*( CONSTANTS[15]*STATES[9]+ CONSTANTS[17]*STATES[10]+ CONSTANTS[18]*STATES[12]+ CONSTANTS[19]*STATES[13]+ CONSTANTS[20]*STATES[14]+ CONSTANTS[21]*STATES[15]+ CONSTANTS[22]*STATES[16]+ CONSTANTS[23]*STATES[17]+ CONSTANTS[24]*STATES[18])) -  ALGEBRAIC[0]*STATES[19];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] =  ((1.00000 - CONSTANTS[16])/1.00000)*( CONSTANTS[15]*STATES[0]+ CONSTANTS[17]*STATES[1]+ CONSTANTS[18]*STATES[2]+ CONSTANTS[19]*STATES[3]+ CONSTANTS[20]*STATES[4])+ ((1.00000 - CONSTANTS[25])/1.00000)*( CONSTANTS[17]*STATES[10]+ CONSTANTS[18]*STATES[12]+ CONSTANTS[19]*STATES[13]+ CONSTANTS[20]*STATES[14]);
ALGEBRAIC[1] = STATES[0]+STATES[1]+STATES[2]+STATES[3]+STATES[4]+STATES[5]+STATES[6]+STATES[7]+STATES[8]+STATES[9]+STATES[12]+STATES[13]+STATES[14]+STATES[15]+STATES[16]+STATES[17]+STATES[18];
ALGEBRAIC[2] = STATES[0]+STATES[1]+STATES[2]+STATES[3]+STATES[4]+STATES[5]+STATES[6]+STATES[7]+STATES[8];
ALGEBRAIC[3] = STATES[9]+STATES[12]+STATES[13]+STATES[14]+STATES[15]+STATES[16]+STATES[17]+STATES[18];
}