/*
   There are a total of 7 entries in the algebraic variable array.
   There are a total of 6 entries in each of the rate and state variable arrays.
   There are a total of 10 entries in the constant variable array.
 */
/*
 * VOI is time in component environment (minute).
 * STATES[0] is C2 in component C2 (millimolar).
 * CONSTANTS[0] is k6 in component reaction_constants (first_order_rate_constant).
 * CONSTANTS[8] is k8 in component reaction_constants (second_order_rate_constant).
 * CONSTANTS[1] is k9 in component reaction_constants (first_order_rate_constant).
 * STATES[1] is M in component M (millimolar).
 * CONSTANTS[2] is P in component reaction_constants (millimolar).
 * STATES[2] is CP in component CP (millimolar).
 * ALGEBRAIC[5] is k3 in component reaction_constants (second_order_rate_constant).
 * STATES[3] is Y in component Y (millimolar).
 * STATES[4] is pM in component pM (millimolar).
 * CONSTANTS[9] is k5 in component reaction_constants (second_order_rate_constant).
 * ALGEBRAIC[6] is F in component reaction_constants (first_order_rate_constant).
 * ALGEBRAIC[4] is k1 in component reaction_constants (first_order_rate_constant).
 * CONSTANTS[3] is k2 in component reaction_constants (first_order_rate_constant).
 * CONSTANTS[4] is aa in component reaction_constants (millimolar).
 * STATES[5] is YP in component YP (millimolar).
 * CONSTANTS[5] is k7 in component reaction_constants (first_order_rate_constant).
 * CONSTANTS[6] is k4 in component reaction_constants (first_order_rate_constant).
 * CONSTANTS[7] is k4_ in component reaction_constants (first_order_rate_constant).
 * ALGEBRAIC[0] is CT in component reaction_constants (millimolar).
 * ALGEBRAIC[1] is YT in component reaction_constants (millimolar).
 * ALGEBRAIC[2] is YT_CT in component reaction_constants (dimensionless).
 * ALGEBRAIC[3] is M_CT in component reaction_constants (dimensionless).
 * RATES[0] is d/dt C2 in component C2 (millimolar).
 * RATES[2] is d/dt CP in component CP (millimolar).
 * RATES[4] is d/dt pM in component pM (millimolar).
 * RATES[1] is d/dt M in component M (millimolar).
 * RATES[3] is d/dt Y in component Y (millimolar).
 * RATES[5] is d/dt YP in component YP (millimolar).
 * There are a total of 0 condition variables.
 */
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
STATES[0] = 0.001;
CONSTANTS[0] = 1.0;
CONSTANTS[1] = 100.0;
STATES[1] = 0.001;
CONSTANTS[2] = 1.0;
STATES[2] = 0.001;
STATES[3] = 0.001;
STATES[4] = 0.001;
CONSTANTS[3] = 0.0;
CONSTANTS[4] = 1.0;
STATES[5] = 0.001;
CONSTANTS[5] = 0.6;
CONSTANTS[6] = 180.0;
CONSTANTS[7] = 0.018;
CONSTANTS[8] = CONSTANTS[1]/CONSTANTS[2];
CONSTANTS[9] = 0.00000/CONSTANTS[2];
RATES[0] = 0.1001;
RATES[2] = 0.1001;
RATES[4] = 0.1001;
RATES[1] = 0.1001;
RATES[3] = 0.1001;
RATES[5] = 0.1001;
}
void
computeResiduals(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
                 double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
resid[0] = RATES[0] - ( CONSTANTS[0]*STATES[1]+ CONSTANTS[1]*STATES[2]) -  CONSTANTS[8]*CONSTANTS[2]*STATES[0];
resid[1] = RATES[2] -  CONSTANTS[8]*CONSTANTS[2]*STATES[0] - ( CONSTANTS[1]*STATES[2]+ ALGEBRAIC[5]*STATES[2]*STATES[3]);
resid[2] = RATES[4] - ( ALGEBRAIC[5]*STATES[2]*STATES[3]+ CONSTANTS[9]*CONSTANTS[2]*STATES[1]) -  STATES[4]*ALGEBRAIC[6];
resid[3] = RATES[1] -  STATES[4]*ALGEBRAIC[6] - ( CONSTANTS[9]*CONSTANTS[2]*STATES[1]+ CONSTANTS[0]*STATES[1]);
resid[4] = RATES[3] -  CONSTANTS[4]*ALGEBRAIC[4] - ( ALGEBRAIC[5]*STATES[2]*STATES[3]+ CONSTANTS[3]*STATES[3]);
resid[5] = RATES[5] -  CONSTANTS[0]*STATES[1] -  CONSTANTS[5]*STATES[5];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[1] = STATES[3]+STATES[5]+STATES[4]+STATES[1];
ALGEBRAIC[2] = ALGEBRAIC[1]/ALGEBRAIC[0];
ALGEBRAIC[3] = STATES[1]/ALGEBRAIC[0];
}
void
computeEssentialVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] = STATES[0]+STATES[2]+STATES[4]+STATES[1];
ALGEBRAIC[4] = ( 0.0150000*ALGEBRAIC[0])/CONSTANTS[4];
ALGEBRAIC[5] = 200.000/ALGEBRAIC[0];
ALGEBRAIC[6] = CONSTANTS[7]+ CONSTANTS[6]*pow(STATES[1]/ALGEBRAIC[0], 2.00000);
}
void
getStateInformation(double* SI)
{
SI[0] = 1.0;
SI[1] = 1.0;
SI[2] = 1.0;
SI[3] = 1.0;
SI[4] = 1.0;
SI[5] = 1.0;
}
void
computeRoots(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
             double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
}