/*
   There are a total of 21 entries in the algebraic variable array.
   There are a total of 32 entries in each of the rate and state variable arrays.
   There are a total of 32 entries in the constant variable array.
 */
/*
 * VOI is time in component environment (second).
 * CONSTANTS[0] is k1 in component constants (second_order_rate_constant).
 * CONSTANTS[1] is k2 in component constants (first_order_rate_constant).
 * CONSTANTS[2] is k3 in component constants (second_order_rate_constant).
 * CONSTANTS[3] is k4 in component constants (first_order_rate_constant).
 * CONSTANTS[4] is k5 in component constants (second_order_rate_constant).
 * CONSTANTS[5] is k6 in component constants (first_order_rate_constant).
 * CONSTANTS[6] is k7 in component constants (second_order_rate_constant).
 * CONSTANTS[7] is k8 in component constants (first_order_rate_constant).
 * CONSTANTS[8] is k9 in component constants (second_order_rate_constant).
 * CONSTANTS[9] is k10 in component constants (first_order_rate_constant).
 * CONSTANTS[10] is k110 in component constants (first_order_rate_constant).
 * CONSTANTS[11] is k120 in component constants (second_order_rate_constant).
 * CONSTANTS[12] is k130 in component constants (first_order_rate_constant).
 * CONSTANTS[13] is k140 in component constants (first_order_rate_constant).
 * CONSTANTS[14] is p in component constants (first_order_rate_constant).
 * CONSTANTS[15] is k15 in component constants (second_order_rate_constant).
 * CONSTANTS[16] is k16 in component constants (first_order_rate_constant).
 * CONSTANTS[17] is k17 in component constants (first_order_rate_constant).
 * CONSTANTS[18] is k18 in component constants (second_order_rate_constant).
 * CONSTANTS[19] is k19 in component constants (first_order_rate_constant).
 * CONSTANTS[20] is k20 in component constants (first_order_rate_constant).
 * CONSTANTS[21] is k21 in component constants (second_order_rate_constant).
 * CONSTANTS[22] is k22 in component constants (first_order_rate_constant).
 * CONSTANTS[23] is k23 in component constants (first_order_rate_constant).
 * CONSTANTS[24] is k24 in component constants (second_order_rate_constant).
 * CONSTANTS[25] is k25 in component constants (first_order_rate_constant).
 * CONSTANTS[26] is k26 in component constants (first_order_rate_constant).
 * CONSTANTS[27] is k28 in component constants (second_order_rate_constant).
 * CONSTANTS[28] is k29 in component constants (second_order_rate_constant).
 * CONSTANTS[29] is d_6 in component constants (first_order_rate_constant).
 * CONSTANTS[30] is k_14 in component constants (flux).
 * CONSTANTS[31] is k_m1 in component constants (rate3).
 * ALGEBRAIC[0] is J1 in component Js (flux).
 * ALGEBRAIC[1] is J2 in component Js (flux).
 * ALGEBRAIC[2] is J3 in component Js (flux).
 * ALGEBRAIC[3] is J4 in component Js (flux).
 * ALGEBRAIC[4] is J5 in component Js (flux).
 * ALGEBRAIC[5] is J6 in component Js (flux).
 * ALGEBRAIC[6] is J7 in component Js (flux).
 * ALGEBRAIC[7] is J8 in component Js (flux).
 * ALGEBRAIC[8] is J9 in component Js (flux).
 * ALGEBRAIC[9] is J10 in component Js (flux).
 * ALGEBRAIC[10] is J11 in component Js (flux).
 * ALGEBRAIC[11] is J12 in component Js (flux).
 * ALGEBRAIC[12] is J13 in component Js (flux).
 * ALGEBRAIC[13] is J14 in component Js (flux).
 * ALGEBRAIC[14] is J15 in component Js (flux).
 * ALGEBRAIC[15] is J16 in component Js (flux).
 * ALGEBRAIC[16] is J17 in component Js (flux).
 * ALGEBRAIC[17] is J18 in component Js (flux).
 * ALGEBRAIC[18] is J19 in component Js (flux).
 * ALGEBRAIC[19] is v14 in component Js (flux).
 * ALGEBRAIC[20] is deg_no in component Js (flux).
 * STATES[0] is R_NOS2 in component cs (nanomolar).
 * STATES[1] is c1 in component cs (nanomolar).
 * STATES[2] is c2 in component cs (nanomolar).
 * STATES[3] is c3 in component cs (nanomolar).
 * STATES[4] is c4 in component cs (nanomolar).
 * STATES[5] is c5 in component cs (nanomolar).
 * STATES[6] is c6 in component cs (nanomolar).
 * STATES[7] is c7 in component cs (nanomolar).
 * STATES[8] is c8 in component cs (nanomolar).
 * STATES[9] is c9 in component cs (nanomolar).
 * STATES[10] is c10 in component cs (nanomolar).
 * STATES[11] is c11 in component cs (nanomolar).
 * STATES[12] is c12 in component cs (nanomolar).
 * STATES[13] is c13 in component cs (nanomolar).
 * STATES[14] is c14 in component cs (nanomolar).
 * STATES[15] is c15 in component cs (nanomolar).
 * STATES[16] is c16 in component cs (nanomolar).
 * STATES[17] is c17 in component cs (nanomolar).
 * STATES[18] is c18 in component cs (nanomolar).
 * STATES[19] is c19 in component cs (nanomolar).
 * STATES[20] is c20 in component cs (nanomolar).
 * STATES[21] is c21 in component cs (nanomolar).
 * STATES[22] is c22 in component cs (nanomolar).
 * STATES[23] is c23 in component cs (nanomolar).
 * STATES[24] is c24 in component cs (nanomolar).
 * STATES[25] is c25 in component cs (nanomolar).
 * STATES[26] is c26 in component cs (nanomolar).
 * STATES[27] is c27 in component cs (nanomolar).
 * STATES[28] is c28 in component cs (nanomolar).
 * STATES[29] is c29 in component cs (nanomolar).
 * STATES[30] is c30 in component cs (nanomolar).
 * STATES[31] is c31 in component cs (nanomolar).
 * RATES[0] is d/dt R_NOS2 in component cs (nanomolar).
 * RATES[1] is d/dt c1 in component cs (nanomolar).
 * RATES[2] is d/dt c2 in component cs (nanomolar).
 * RATES[3] is d/dt c3 in component cs (nanomolar).
 * RATES[4] is d/dt c4 in component cs (nanomolar).
 * RATES[5] is d/dt c5 in component cs (nanomolar).
 * RATES[6] is d/dt c6 in component cs (nanomolar).
 * RATES[7] is d/dt c7 in component cs (nanomolar).
 * RATES[8] is d/dt c8 in component cs (nanomolar).
 * RATES[9] is d/dt c9 in component cs (nanomolar).
 * RATES[10] is d/dt c10 in component cs (nanomolar).
 * RATES[11] is d/dt c11 in component cs (nanomolar).
 * RATES[12] is d/dt c12 in component cs (nanomolar).
 * RATES[13] is d/dt c13 in component cs (nanomolar).
 * RATES[14] is d/dt c14 in component cs (nanomolar).
 * RATES[15] is d/dt c15 in component cs (nanomolar).
 * RATES[16] is d/dt c16 in component cs (nanomolar).
 * RATES[17] is d/dt c17 in component cs (nanomolar).
 * RATES[18] is d/dt c18 in component cs (nanomolar).
 * RATES[19] is d/dt c19 in component cs (nanomolar).
 * RATES[20] is d/dt c20 in component cs (nanomolar).
 * RATES[21] is d/dt c21 in component cs (nanomolar).
 * RATES[22] is d/dt c22 in component cs (nanomolar).
 * RATES[23] is d/dt c23 in component cs (nanomolar).
 * RATES[24] is d/dt c24 in component cs (nanomolar).
 * RATES[25] is d/dt c25 in component cs (nanomolar).
 * RATES[26] is d/dt c26 in component cs (nanomolar).
 * RATES[27] is d/dt c27 in component cs (nanomolar).
 * RATES[28] is d/dt c28 in component cs (nanomolar).
 * RATES[29] is d/dt c29 in component cs (nanomolar).
 * RATES[30] is d/dt c30 in component cs (nanomolar).
 * RATES[31] is d/dt c31 in component cs (nanomolar).
 * There are a total of 0 condition variables.
 */
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
CONSTANTS[0] = 185e-6;
CONSTANTS[1] = 1.25e-6;
CONSTANTS[2] = 185e-6;
CONSTANTS[3] = 1.25e-6;
CONSTANTS[4] = 185e-6;
CONSTANTS[5] = 1.25e-6;
CONSTANTS[6] = 185e-6;
CONSTANTS[7] = 1.25e-6;
CONSTANTS[8] = 185e-6;
CONSTANTS[9] = 1.25e-6;
CONSTANTS[10] = 370e-6;
CONSTANTS[11] = 14e-6;
CONSTANTS[12] = 1.25e-6;
CONSTANTS[13] = 370e-6;
CONSTANTS[14] = 1750e-6;
CONSTANTS[15] = 185e-6;
CONSTANTS[16] = 1.25e-6;
CONSTANTS[17] = 370e-6;
CONSTANTS[18] = 500e-6;
CONSTANTS[19] = 200e-6;
CONSTANTS[20] = 100e-6;
CONSTANTS[21] = 100e-6;
CONSTANTS[22] = 60e-6;
CONSTANTS[23] = 100000e-6;
CONSTANTS[24] = 185e-6;
CONSTANTS[25] = 1.25e-6;
CONSTANTS[26] = 370e-6;
CONSTANTS[27] = 500e-6;
CONSTANTS[28] = 750000e-6;
CONSTANTS[29] = 2.83e-4;
CONSTANTS[30] = 41.6;
CONSTANTS[31] = 10e5;
STATES[0] = 0.616;
STATES[1] = 0;
STATES[2] = 100;
STATES[3] = 0;
STATES[4] = 150;
STATES[5] = 0;
STATES[6] = 100;
STATES[7] = 0;
STATES[8] = 100;
STATES[9] = 0;
STATES[10] = 100;
STATES[11] = 0;
STATES[12] = 0;
STATES[13] = 250;
STATES[14] = 0;
STATES[15] = 0;
STATES[16] = 0;
STATES[17] = 100;
STATES[18] = 0;
STATES[19] = 0;
STATES[20] = 80;
STATES[21] = 0;
STATES[22] = 0;
STATES[23] = 200;
STATES[24] = 0;
STATES[25] = 0;
STATES[26] = 0;
STATES[27] = 0;
STATES[28] = 0;
STATES[29] = 800;
STATES[30] = 0;
STATES[31] = 0;
RATES[0] = 0.1001;
RATES[1] = 0.1001;
RATES[2] = 0.1001;
RATES[3] = 0.1001;
RATES[4] = 0.1001;
RATES[5] = 0.1001;
RATES[6] = 0.1001;
RATES[7] = 0.1001;
RATES[8] = 0.1001;
RATES[9] = 0.1001;
RATES[10] = 0.1001;
RATES[11] = 0.1001;
RATES[12] = 0.1001;
RATES[13] = 0.1001;
RATES[14] = 0.1001;
RATES[15] = 0.1001;
RATES[16] = 0.1001;
RATES[17] = 0.1001;
RATES[18] = 0.1001;
RATES[19] = 0.1001;
RATES[20] = 0.1001;
RATES[21] = 0.1001;
RATES[22] = 0.1001;
RATES[23] = 0.1001;
RATES[24] = 0.1001;
RATES[25] = 0.1001;
RATES[26] = 0.1001;
RATES[27] = 0.1001;
RATES[28] = 0.1001;
RATES[29] = 0.1001;
RATES[30] = 0.1001;
RATES[31] = 0.1001;
}
void
computeResiduals(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
                 double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
resid[0] = RATES[0] - ALGEBRAIC[19] - ALGEBRAIC[20];
resid[1] = RATES[1] - - ALGEBRAIC[0];
resid[2] = RATES[2] - - ALGEBRAIC[0]+ALGEBRAIC[9]+ALGEBRAIC[5];
resid[3] = RATES[3] - ALGEBRAIC[0] - ALGEBRAIC[1];
resid[4] = RATES[4] - - ALGEBRAIC[1]+ALGEBRAIC[5]+ALGEBRAIC[11];
resid[5] = RATES[5] - ALGEBRAIC[1] - ALGEBRAIC[2];
resid[6] = RATES[6] - - ALGEBRAIC[2]+ALGEBRAIC[5]+ALGEBRAIC[11];
resid[7] = RATES[7] - ALGEBRAIC[2] - ALGEBRAIC[3];
resid[8] = RATES[8] - - ALGEBRAIC[3]+ALGEBRAIC[5]+ALGEBRAIC[11];
resid[9] = RATES[9] - (ALGEBRAIC[3] - ALGEBRAIC[4]) - ALGEBRAIC[8];
resid[10] = RATES[10] - - ALGEBRAIC[4]+ALGEBRAIC[7];
resid[11] = RATES[11] - ALGEBRAIC[4] - ALGEBRAIC[5];
resid[12] = RATES[12] - - ALGEBRAIC[6]+ALGEBRAIC[5];
resid[13] = RATES[13] - - ALGEBRAIC[6]+ALGEBRAIC[18];
resid[14] = RATES[14] - ALGEBRAIC[6] - ALGEBRAIC[7];
resid[15] = RATES[15] - ALGEBRAIC[7];
resid[16] = RATES[16] - ALGEBRAIC[7] - ALGEBRAIC[18];
resid[17] = RATES[17] - - ALGEBRAIC[8]+ALGEBRAIC[11];
resid[18] = RATES[18] - ALGEBRAIC[8] - ALGEBRAIC[9];
resid[19] = RATES[19] - ALGEBRAIC[9] - ALGEBRAIC[10];
resid[20] = RATES[20] - - ALGEBRAIC[10];
resid[21] = RATES[21] - ALGEBRAIC[10] - ALGEBRAIC[11];
resid[22] = RATES[22] - (ALGEBRAIC[11] - ALGEBRAIC[12])+ALGEBRAIC[13];
resid[23] = RATES[23] - - ALGEBRAIC[12];
resid[24] = RATES[24] - ALGEBRAIC[12] - ALGEBRAIC[13];
resid[25] = RATES[25] - ((ALGEBRAIC[13] - ALGEBRAIC[17]) - ALGEBRAIC[14])+ALGEBRAIC[15];
resid[26] = RATES[26] - ALGEBRAIC[15];
resid[27] = RATES[27] - ALGEBRAIC[16] - ALGEBRAIC[17];
resid[28] = RATES[28] - ALGEBRAIC[17];
resid[29] = RATES[29] - - ALGEBRAIC[14];
resid[30] = RATES[30] - ALGEBRAIC[14] - ALGEBRAIC[15];
resid[31] = RATES[31] - ALGEBRAIC[16] - ALGEBRAIC[18];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
}
void
computeEssentialVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] =  CONSTANTS[0]*STATES[1]*STATES[2] -  CONSTANTS[1]*STATES[3];
ALGEBRAIC[1] =  CONSTANTS[2]*STATES[3]*STATES[4] -  CONSTANTS[3]*STATES[5];
ALGEBRAIC[2] =  CONSTANTS[4]*STATES[5]*STATES[6] -  CONSTANTS[5]*STATES[7];
ALGEBRAIC[3] =  CONSTANTS[6]*STATES[7]*STATES[8] -  CONSTANTS[7]*STATES[9];
ALGEBRAIC[4] =  CONSTANTS[8]*STATES[10]*STATES[9] -  CONSTANTS[9]*STATES[11];
ALGEBRAIC[5] =  CONSTANTS[10]*STATES[11];
ALGEBRAIC[6] =  CONSTANTS[11]*STATES[12]*STATES[13] -  CONSTANTS[12]*STATES[14];
ALGEBRAIC[7] =  CONSTANTS[13]*STATES[14];
ALGEBRAIC[8] =  CONSTANTS[15]*STATES[9]*STATES[17] -  CONSTANTS[16]*STATES[18];
ALGEBRAIC[9] =  CONSTANTS[17]*STATES[18];
ALGEBRAIC[10] =  CONSTANTS[18]*STATES[19]*STATES[20] -  CONSTANTS[19]*STATES[21];
ALGEBRAIC[11] =  CONSTANTS[20]*STATES[21];
ALGEBRAIC[12] =  CONSTANTS[21]*STATES[22]*STATES[23] -  CONSTANTS[22]*STATES[24];
ALGEBRAIC[13] =  CONSTANTS[23]*STATES[24];
ALGEBRAIC[14] =  CONSTANTS[24]*STATES[25]*STATES[29] -  CONSTANTS[25]*STATES[30];
ALGEBRAIC[15] =  CONSTANTS[26]*STATES[30];
ALGEBRAIC[16] =  CONSTANTS[14]*STATES[16];
ALGEBRAIC[17] =  CONSTANTS[27]*STATES[27]*STATES[25];
ALGEBRAIC[18] =  CONSTANTS[28]*STATES[16]*STATES[31];
ALGEBRAIC[19] = ( CONSTANTS[30]*pow(STATES[16], 2.00000))/(CONSTANTS[31]+pow(STATES[16], 2.00000));
ALGEBRAIC[20] =  CONSTANTS[29]*STATES[0];
}
void
getStateInformation(double* SI)
{
SI[0] = 1.0;
SI[1] = 1.0;
SI[2] = 1.0;
SI[3] = 1.0;
SI[4] = 1.0;
SI[5] = 1.0;
SI[6] = 1.0;
SI[7] = 1.0;
SI[8] = 1.0;
SI[9] = 1.0;
SI[10] = 1.0;
SI[11] = 1.0;
SI[12] = 1.0;
SI[13] = 1.0;
SI[14] = 1.0;
SI[15] = 1.0;
SI[16] = 1.0;
SI[17] = 1.0;
SI[18] = 1.0;
SI[19] = 1.0;
SI[20] = 1.0;
SI[21] = 1.0;
SI[22] = 1.0;
SI[23] = 1.0;
SI[24] = 1.0;
SI[25] = 1.0;
SI[26] = 1.0;
SI[27] = 1.0;
SI[28] = 1.0;
SI[29] = 1.0;
SI[30] = 1.0;
SI[31] = 1.0;
}
void
computeRoots(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
             double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
}