/*
   There are a total of 33 entries in the algebraic variable array.
   There are a total of 7 entries in each of the rate and state variable arrays.
   There are a total of 47 entries in the constant variable array.
 */
/*
 * VOI is time in component Environment (ms).
 * STATES[0] is NADHm in component Mitochondrial_variables (mM).
 * ALGEBRAIC[15] is Jpdh in component J_variables (uM_per_ms).
 * ALGEBRAIC[8] is Jo in component J_variables (uM_per_ms).
 * CONSTANTS[0] is gamma in component Mitochondrial_variables (dimensionless).
 * ALGEBRAIC[0] is NADm in component Mitochondrial_variables (mM).
 * STATES[1] is ADPm in component Mitochondrial_variables (mM).
 * STATES[2] is PSIm in component Mitochondrial_variables (mV).
 * STATES[3] is Cam in component Mitochondrial_variables (uM).
 * CONSTANTS[1] is NADtot in component Mitochondrial_variables (mM).
 * CONSTANTS[2] is fm in component Mitochondrial_variables (dimensionless).
 * CONSTANTS[3] is Cmito in component Mitochondrial_variables (uM_per_mV).
 * CONSTANTS[4] is Amtot in component Mitochondrial_variables (mM).
 * ALGEBRAIC[1] is ATPm in component Mitochondrial_variables (mM).
 * ALGEBRAIC[5] is RATm in component Mitochondrial_variables (dimensionless).
 * ALGEBRAIC[32] is Jant in component J_variables (uM_per_ms).
 * ALGEBRAIC[31] is Jf1f0 in component J_variables (uM_per_ms).
 * ALGEBRAIC[25] is Jh_res in component J_variables (uM_per_ms).
 * ALGEBRAIC[29] is Jh_atp in component J_variables (uM_per_ms).
 * ALGEBRAIC[20] is Jh_leak in component J_variables (uM_per_ms).
 * ALGEBRAIC[18] is Jnaca in component J_variables (uM_per_ms).
 * ALGEBRAIC[16] is Juni in component J_variables (uM_per_ms).
 * ALGEBRAIC[21] is Jmito in component J_variables (uM_per_ms).
 * STATES[4] is c in component Clamp_protocol (uM).
 * ALGEBRAIC[9] is ATPc in component Cytosol (mM).
 * STATES[5] is ADPc in component Cytosol (uM).
 * CONSTANTS[5] is Ac_tot in component Cytosol (uM).
 * CONSTANTS[6] is khyd in component Cytosol (dimensionless).
 * CONSTANTS[7] is Jhydbas in component Cytosol (mM).
 * ALGEBRAIC[13] is Jh_yd in component Cytosol (mM).
 * CONSTANTS[46] is delta in component Cytosol (dimensionless).
 * ALGEBRAIC[10] is Fproto in component Clamp_parameters (uM).
 * ALGEBRAIC[28] is Cproto in component Clamp_parameters (uM).
 * STATES[6] is FBP in component Clamp_protocol (uM).
 * CONSTANTS[8] is Fhold in component Clamp_parameters (uM).
 * CONSTANTS[9] is Ftest in component Clamp_parameters (uM).
 * CONSTANTS[10] is Fton in component Clamp_parameters (ms).
 * CONSTANTS[11] is Ftoff in component Clamp_parameters (ms).
 * CONSTANTS[12] is Chold in component Clamp_parameters (uM).
 * CONSTANTS[13] is Ctest in component Clamp_parameters (uM).
 * CONSTANTS[14] is Cton1 in component Clamp_parameters (ms).
 * CONSTANTS[15] is Cton2 in component Clamp_parameters (ms).
 * CONSTANTS[16] is Cton3 in component Clamp_parameters (ms).
 * CONSTANTS[17] is Ctoff1 in component Clamp_parameters (ms).
 * CONSTANTS[18] is Ctoff2 in component Clamp_parameters (ms).
 * CONSTANTS[19] is Ctoff3 in component Clamp_parameters (ms).
 * ALGEBRAIC[17] is pulse1 in component Clamp_parameters (uM).
 * ALGEBRAIC[22] is pulse2 in component Clamp_parameters (uM).
 * ALGEBRAIC[26] is pulse3 in component Clamp_parameters (uM).
 * ALGEBRAIC[2] is heav_on in component Clamp_parameters (dimensionless).
 * ALGEBRAIC[6] is heav_off in component Clamp_parameters (dimensionless).
 * ALGEBRAIC[3] is heav_Cton1 in component Clamp_parameters (dimensionless).
 * ALGEBRAIC[7] is heav_Cton2 in component Clamp_parameters (dimensionless).
 * ALGEBRAIC[11] is heav_Cton3 in component Clamp_parameters (dimensionless).
 * ALGEBRAIC[14] is heav_Ctoff1 in component Clamp_parameters (dimensionless).
 * ALGEBRAIC[19] is heav_Ctoff2 in component Clamp_parameters (dimensionless).
 * ALGEBRAIC[24] is heav_Ctoff3 in component Clamp_parameters (dimensionless).
 * ALGEBRAIC[12] is Jgpdh in component J_variables (uM_per_ms).
 * CONSTANTS[20] is p1 in component Parameters (dimensionless).
 * CONSTANTS[21] is p2 in component Parameters (dimensionless).
 * CONSTANTS[22] is p3 in component Parameters (uM).
 * CONSTANTS[23] is p21 in component Parameters (per_uM_per_ms_per_mV).
 * CONSTANTS[24] is p22 in component Parameters (per_uM_per_ms).
 * CONSTANTS[25] is p23 in component Parameters (uM_per_ms).
 * CONSTANTS[26] is p24 in component Parameters (per_mV).
 * CONSTANTS[27] is p4 in component Parameters (uM_per_ms).
 * CONSTANTS[28] is p5 in component Parameters (mM).
 * CONSTANTS[29] is p6 in component Parameters (mV).
 * CONSTANTS[30] is p7 in component Parameters (mV).
 * CONSTANTS[31] is p8 in component Parameters (uM_per_ms).
 * CONSTANTS[32] is p9 in component Parameters (mM).
 * CONSTANTS[33] is p10 in component Parameters (mV).
 * CONSTANTS[34] is p11 in component Parameters (mV).
 * CONSTANTS[35] is p12 in component Parameters (uM_per_ms).
 * CONSTANTS[36] is p13 in component Parameters (mM).
 * CONSTANTS[37] is p14 in component Parameters (mV).
 * CONSTANTS[38] is p15 in component Parameters (mV).
 * CONSTANTS[39] is p16 in component Parameters (uM_per_ms).
 * CONSTANTS[40] is p17 in component Parameters (uM_per_ms_per_mV).
 * CONSTANTS[41] is p18 in component Parameters (uM_per_ms).
 * CONSTANTS[42] is p19 in component Parameters (uM_per_ms).
 * CONSTANTS[43] is p20 in component Parameters (dimensionless).
 * ALGEBRAIC[4] is MM1 in component J_variables (uM_per_ms).
 * ALGEBRAIC[23] is MM2 in component J_variables (uM_per_ms).
 * ALGEBRAIC[27] is b13 in component J_variables (uM_per_ms).
 * ALGEBRAIC[30] is b2 in component J_variables (uM_per_ms).
 * CONSTANTS[44] is FRT in component J_variables (per_mV).
 * CONSTANTS[45] is kgpdh in component J_variables (uM_per_ms).
 * RATES[0] is d/dt NADHm in component Mitochondrial_variables (mM).
 * RATES[1] is d/dt ADPm in component Mitochondrial_variables (mM).
 * RATES[2] is d/dt PSIm in component Mitochondrial_variables (mV).
 * RATES[3] is d/dt Cam in component Mitochondrial_variables (uM).
 * RATES[5] is d/dt ADPc in component Cytosol (uM).
 * RATES[6] is d/dt FBP in component Clamp_protocol (uM).
 * RATES[4] is d/dt c in component Clamp_protocol (uM).
 */
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
STATES[0] = 0.6;
CONSTANTS[0] = 0.001;
STATES[1] = 7.4;
STATES[2] = 93;
STATES[3] = 0.1;
CONSTANTS[1] = 10;
CONSTANTS[2] = 0.01;
CONSTANTS[3] = 1.8;
CONSTANTS[4] = 15;
STATES[4] = 0.1;
STATES[5] = 1850;
CONSTANTS[5] = 2500;
CONSTANTS[6] = 0.00005;
CONSTANTS[7] = 0.00005;
STATES[6] = 0.5;
CONSTANTS[8] = 1;
CONSTANTS[9] = 5;
CONSTANTS[10] = 90000;
CONSTANTS[11] = 330000;
CONSTANTS[12] = 0.1;
CONSTANTS[13] = 0.1;
CONSTANTS[14] = 120000;
CONSTANTS[15] = 180000;
CONSTANTS[16] = 240000;
CONSTANTS[17] = 150000;
CONSTANTS[18] = 210000;
CONSTANTS[19] = 270000;
CONSTANTS[20] = 400;
CONSTANTS[21] = 1;
CONSTANTS[22] = 0.01;
CONSTANTS[23] = 0.01;
CONSTANTS[24] = 1.1;
CONSTANTS[25] = 0.001;
CONSTANTS[26] = 0.016;
CONSTANTS[27] = 0.6;
CONSTANTS[28] = 0.1;
CONSTANTS[29] = 177;
CONSTANTS[30] = 5;
CONSTANTS[31] = 7;
CONSTANTS[32] = 0.1;
CONSTANTS[33] = 177;
CONSTANTS[34] = 5;
CONSTANTS[35] = 120;
CONSTANTS[36] = 10;
CONSTANTS[37] = 190;
CONSTANTS[38] = 8.5;
CONSTANTS[39] = 35;
CONSTANTS[40] = 0.002;
CONSTANTS[41] = -0.03;
CONSTANTS[42] = 0.35;
CONSTANTS[43] = 2;
CONSTANTS[44] = 0.037;
CONSTANTS[45] = 0.0005;
CONSTANTS[46] = 3.90000/53.2000;
}
void
computeRates(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[2] = (VOI - CONSTANTS[10]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[6] = (VOI - CONSTANTS[11]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[10] = CONSTANTS[8]+ (CONSTANTS[9] - CONSTANTS[8])*(ALGEBRAIC[2] - ALGEBRAIC[6]);
RATES[6] = (ALGEBRAIC[10] - STATES[6])/0.100000;
ALGEBRAIC[0] = CONSTANTS[1] - STATES[0];
ALGEBRAIC[12] =  CONSTANTS[45]* pow((STATES[6]/1.00000), 1.0 / 2);
ALGEBRAIC[15] =  (CONSTANTS[20]/(CONSTANTS[21]+STATES[0]/ALGEBRAIC[0]))*(STATES[3]/(CONSTANTS[22]+STATES[3]))*ALGEBRAIC[12];
ALGEBRAIC[4] = ( CONSTANTS[27]*STATES[0])/(CONSTANTS[28]+STATES[0]);
ALGEBRAIC[8] = ALGEBRAIC[4]/(1.00000+exp((STATES[2] - CONSTANTS[29])/CONSTANTS[30]));
RATES[0] =  CONSTANTS[0]*(ALGEBRAIC[15] - ALGEBRAIC[8]);
ALGEBRAIC[18] =  (( CONSTANTS[25]*STATES[3])/STATES[4])*exp( CONSTANTS[26]*STATES[2]);
ALGEBRAIC[16] =  ( CONSTANTS[23]*STATES[2] - CONSTANTS[24])*pow(STATES[4], 2.00000);
ALGEBRAIC[21] = ALGEBRAIC[18] - ALGEBRAIC[16];
RATES[3] =  - CONSTANTS[2]*ALGEBRAIC[21];
ALGEBRAIC[3] = (VOI - CONSTANTS[14]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[14] = (VOI - CONSTANTS[17]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[17] =  (CONSTANTS[13] - CONSTANTS[12])*(ALGEBRAIC[3] - ALGEBRAIC[14]);
ALGEBRAIC[7] = (VOI - CONSTANTS[15]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[19] = (VOI - CONSTANTS[18]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[22] =  (CONSTANTS[13] - CONSTANTS[12])*(ALGEBRAIC[7] - ALGEBRAIC[19]);
ALGEBRAIC[11] = (VOI - CONSTANTS[16]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[24] = (VOI - CONSTANTS[19]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[26] =  (CONSTANTS[13] - CONSTANTS[12])*(ALGEBRAIC[11] - ALGEBRAIC[24]);
ALGEBRAIC[28] = CONSTANTS[12]+ALGEBRAIC[17]+ALGEBRAIC[22]+ALGEBRAIC[26];
RATES[4] = (ALGEBRAIC[28] - STATES[4])/0.100000;
ALGEBRAIC[1] = CONSTANTS[4] - STATES[1];
ALGEBRAIC[5] = ALGEBRAIC[1]/STATES[1];
ALGEBRAIC[32] = (( CONSTANTS[42]*ALGEBRAIC[5])/(ALGEBRAIC[5]+CONSTANTS[43]))/exp( - 0.500000*CONSTANTS[44]*STATES[2]);
ALGEBRAIC[30] = ( CONSTANTS[39]*CONSTANTS[36])/(CONSTANTS[36]+ALGEBRAIC[1]);
ALGEBRAIC[31] = ALGEBRAIC[30]/(1.00000+exp((CONSTANTS[37] - STATES[2])/CONSTANTS[38]));
RATES[1] =  CONSTANTS[0]*(ALGEBRAIC[32] - ALGEBRAIC[31]);
ALGEBRAIC[23] = ( CONSTANTS[31]*STATES[0])/(CONSTANTS[32]+STATES[0]);
ALGEBRAIC[25] = ALGEBRAIC[23]/(1.00000+exp((STATES[2] - CONSTANTS[33])/CONSTANTS[34]));
ALGEBRAIC[27] = ( CONSTANTS[35]*CONSTANTS[36])/(CONSTANTS[36]+ALGEBRAIC[1]);
ALGEBRAIC[29] = ALGEBRAIC[27]/(1.00000+exp((CONSTANTS[37] - STATES[2])/CONSTANTS[38]));
ALGEBRAIC[20] =  CONSTANTS[40]*STATES[2]+CONSTANTS[41];
RATES[2] = (((((ALGEBRAIC[25] - ALGEBRAIC[29]) - ALGEBRAIC[32]) - ALGEBRAIC[20]) - ALGEBRAIC[18]) -  ALGEBRAIC[16]*2.00000)/CONSTANTS[3];
ALGEBRAIC[9] = CONSTANTS[5] - STATES[5];
ALGEBRAIC[13] = ( ( CONSTANTS[6]*STATES[4]+CONSTANTS[7])*ALGEBRAIC[9])/1.00000;
RATES[5] =  - CONSTANTS[46]*ALGEBRAIC[32]+ ALGEBRAIC[13]*1.00000;
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[2] = (VOI - CONSTANTS[10]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[6] = (VOI - CONSTANTS[11]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[10] = CONSTANTS[8]+ (CONSTANTS[9] - CONSTANTS[8])*(ALGEBRAIC[2] - ALGEBRAIC[6]);
ALGEBRAIC[0] = CONSTANTS[1] - STATES[0];
ALGEBRAIC[12] =  CONSTANTS[45]* pow((STATES[6]/1.00000), 1.0 / 2);
ALGEBRAIC[15] =  (CONSTANTS[20]/(CONSTANTS[21]+STATES[0]/ALGEBRAIC[0]))*(STATES[3]/(CONSTANTS[22]+STATES[3]))*ALGEBRAIC[12];
ALGEBRAIC[4] = ( CONSTANTS[27]*STATES[0])/(CONSTANTS[28]+STATES[0]);
ALGEBRAIC[8] = ALGEBRAIC[4]/(1.00000+exp((STATES[2] - CONSTANTS[29])/CONSTANTS[30]));
ALGEBRAIC[18] =  (( CONSTANTS[25]*STATES[3])/STATES[4])*exp( CONSTANTS[26]*STATES[2]);
ALGEBRAIC[16] =  ( CONSTANTS[23]*STATES[2] - CONSTANTS[24])*pow(STATES[4], 2.00000);
ALGEBRAIC[21] = ALGEBRAIC[18] - ALGEBRAIC[16];
ALGEBRAIC[3] = (VOI - CONSTANTS[14]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[14] = (VOI - CONSTANTS[17]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[17] =  (CONSTANTS[13] - CONSTANTS[12])*(ALGEBRAIC[3] - ALGEBRAIC[14]);
ALGEBRAIC[7] = (VOI - CONSTANTS[15]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[19] = (VOI - CONSTANTS[18]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[22] =  (CONSTANTS[13] - CONSTANTS[12])*(ALGEBRAIC[7] - ALGEBRAIC[19]);
ALGEBRAIC[11] = (VOI - CONSTANTS[16]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[24] = (VOI - CONSTANTS[19]>=0.00000 ? 1.00000 : 0.00000);
ALGEBRAIC[26] =  (CONSTANTS[13] - CONSTANTS[12])*(ALGEBRAIC[11] - ALGEBRAIC[24]);
ALGEBRAIC[28] = CONSTANTS[12]+ALGEBRAIC[17]+ALGEBRAIC[22]+ALGEBRAIC[26];
ALGEBRAIC[1] = CONSTANTS[4] - STATES[1];
ALGEBRAIC[5] = ALGEBRAIC[1]/STATES[1];
ALGEBRAIC[32] = (( CONSTANTS[42]*ALGEBRAIC[5])/(ALGEBRAIC[5]+CONSTANTS[43]))/exp( - 0.500000*CONSTANTS[44]*STATES[2]);
ALGEBRAIC[30] = ( CONSTANTS[39]*CONSTANTS[36])/(CONSTANTS[36]+ALGEBRAIC[1]);
ALGEBRAIC[31] = ALGEBRAIC[30]/(1.00000+exp((CONSTANTS[37] - STATES[2])/CONSTANTS[38]));
ALGEBRAIC[23] = ( CONSTANTS[31]*STATES[0])/(CONSTANTS[32]+STATES[0]);
ALGEBRAIC[25] = ALGEBRAIC[23]/(1.00000+exp((STATES[2] - CONSTANTS[33])/CONSTANTS[34]));
ALGEBRAIC[27] = ( CONSTANTS[35]*CONSTANTS[36])/(CONSTANTS[36]+ALGEBRAIC[1]);
ALGEBRAIC[29] = ALGEBRAIC[27]/(1.00000+exp((CONSTANTS[37] - STATES[2])/CONSTANTS[38]));
ALGEBRAIC[20] =  CONSTANTS[40]*STATES[2]+CONSTANTS[41];
ALGEBRAIC[9] = CONSTANTS[5] - STATES[5];
ALGEBRAIC[13] = ( ( CONSTANTS[6]*STATES[4]+CONSTANTS[7])*ALGEBRAIC[9])/1.00000;
}