Generated Code
The following is c_ida code generated by the CellML API from this CellML file. (Back to language selection)
The raw code is available.
/* There are a total of 2 entries in the algebraic variable array. There are a total of 5 entries in each of the rate and state variable arrays. There are a total of 35 entries in the constant variable array. */ /* * VOI is time in component environment (hour). * STATES[0] is GH in component GH (ng_ml). * CONSTANTS[0] is GHS in component GH (dimensionless). * CONSTANTS[1] is k1 in component GH (first_order_rate_constant). * CONSTANTS[2] is kr1 in component GH (ng_ml_hr). * CONSTANTS[3] is t1 in component GH (pg_ml). * CONSTANTS[4] is n1 in component GH (dimensionless). * CONSTANTS[5] is n2 in component GH (dimensionless). * CONSTANTS[6] is g0 in component GH (dimensionless). * CONSTANTS[7] is ng0 in component GH (dimensionless). * CONSTANTS[8] is tg0 in component GH (dimensionless). * CONSTANTS[9] is t2 in component GH (pg_ml). * STATES[1] is SRIF_PeV in component SRIF_PeV (pg_ml). * CONSTANTS[33] is F1_GHS in component F (dimensionless). * STATES[2] is GHRH in component GHRH (pg_ml). * STATES[3] is ghr_GHRH in component ghr_GHRH (pg_ml). * CONSTANTS[10] is k4 in component SRIF_PeV (first_order_rate_constant). * CONSTANTS[11] is kr4 in component SRIF_PeV (pg_ml_hr). * CONSTANTS[12] is t5 in component SRIF_PeV (ng_ml). * CONSTANTS[13] is n5 in component SRIF_PeV (dimensionless). * CONSTANTS[14] is S_basal in component SRIF_PeV (pg_ml_hr). * STATES[4] is SRIF_ArC in component SRIF_ArC (pg_ml). * CONSTANTS[15] is k2 in component SRIF_ArC (first_order_rate_constant). * CONSTANTS[16] is kr2 in component SRIF_ArC (pg_ml_hr). * CONSTANTS[17] is t3 in component SRIF_ArC (pg_ml). * CONSTANTS[18] is n3 in component SRIF_ArC (dimensionless). * CONSTANTS[19] is k3 in component GHRH (first_order_rate_constant). * CONSTANTS[20] is kr3 in component GHRH (pg_ml_hr). * CONSTANTS[21] is t4 in component GHRH (pg_ml). * CONSTANTS[22] is n4 in component GHRH (dimensionless). * CONSTANTS[34] is F2_GHS in component F (dimensionless). * CONSTANTS[23] is g1 in component F (dimensionless). * CONSTANTS[24] is g2 in component F (dimensionless). * CONSTANTS[25] is tg1 in component F (dimensionless). * CONSTANTS[26] is tg2 in component F (dimensionless). * CONSTANTS[27] is ng1 in component F (dimensionless). * CONSTANTS[28] is ng2 in component F (dimensionless). * ALGEBRAIC[1] is dghr_GHRH_dt in component ghr_GHRH (pg_ml_hr). * ALGEBRAIC[0] is inject in component ghr_GHRH (pg_ml_hr). * CONSTANTS[29] is kghr in component ghr_GHRH (first_order_rate_constant). * CONSTANTS[30] is C in component ghr_GHRH (pg_ml_hr). * CONSTANTS[31] is onset in component ghr_GHRH (hour). * CONSTANTS[32] is duration in component ghr_GHRH (hour). * RATES[0] is d/dt GH in component GH (ng_ml). * RATES[1] is d/dt SRIF_PeV in component SRIF_PeV (pg_ml). * RATES[4] is d/dt SRIF_ArC in component SRIF_ArC (pg_ml). * RATES[2] is d/dt GHRH in component GHRH (pg_ml). * RATES[3] is d/dt ghr_GHRH in component ghr_GHRH (pg_ml). * There are a total of 4 condition variables. */ void initConsts(double* CONSTANTS, double* RATES, double *STATES) { STATES[0] = 0.0; CONSTANTS[0] = 20.0; CONSTANTS[1] = 3.0; CONSTANTS[2] = 600.0; CONSTANTS[3] = 400.0; CONSTANTS[4] = 5.0; CONSTANTS[5] = 2.0; CONSTANTS[6] = 1.0; CONSTANTS[7] = 2.9; CONSTANTS[8] = 200.0; CONSTANTS[9] = 10.0; STATES[1] = 0.0; STATES[2] = 0.0; STATES[3] = 0.0; CONSTANTS[10] = 25.0; CONSTANTS[11] = 20400.0; CONSTANTS[12] = 10.0; CONSTANTS[13] = 2.0; CONSTANTS[14] = 900.0; STATES[4] = 0.0; CONSTANTS[15] = 25.0; CONSTANTS[16] = 2200.0; CONSTANTS[17] = 400.0; CONSTANTS[18] = 2.0; CONSTANTS[19] = 40.0; CONSTANTS[20] = 63000.0; CONSTANTS[21] = 28.0; CONSTANTS[22] = 5.0; CONSTANTS[23] = 45000.0; CONSTANTS[24] = 100.0; CONSTANTS[25] = 390.0; CONSTANTS[26] = 10000.0; CONSTANTS[27] = 3.0; CONSTANTS[28] = 2.0; CONSTANTS[29] = 15.0; CONSTANTS[30] = 10000.0; CONSTANTS[31] = 2.0; CONSTANTS[32] = 0.2; CONSTANTS[33] = CONSTANTS[23]*(pow(CONSTANTS[0]/CONSTANTS[25], CONSTANTS[27])/(1.00000+pow(CONSTANTS[0]/CONSTANTS[25], CONSTANTS[27]))); CONSTANTS[34] = CONSTANTS[24]*(pow(CONSTANTS[0]/CONSTANTS[26], CONSTANTS[28])/(1.00000+pow(CONSTANTS[0]/CONSTANTS[26], CONSTANTS[28]))); RATES[0] = 0.1001; RATES[1] = 0.1001; RATES[4] = 0.1001; RATES[2] = 0.1001; RATES[3] = 0.1001; } void computeResiduals(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES, double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS) { resid[0] = RATES[0] - CONSTANTS[2]*(pow((STATES[2]+STATES[3])/CONSTANTS[3], CONSTANTS[4])/(pow((STATES[2]+STATES[3])/CONSTANTS[3], CONSTANTS[4])+1.00000)+ CONSTANTS[6]*(pow(CONSTANTS[0]/CONSTANTS[8], CONSTANTS[7])/(1.00000+pow(CONSTANTS[0]/CONSTANTS[8], CONSTANTS[7])))+(1.00000+CONSTANTS[33])/(1.00000+pow(STATES[1]/CONSTANTS[9], CONSTANTS[5])+CONSTANTS[33])) - CONSTANTS[1]*STATES[0]; resid[1] = RATES[1] - - ( CONSTANTS[10]*STATES[1])+ CONSTANTS[11]*(pow(STATES[0]/CONSTANTS[12], CONSTANTS[13])/(pow(STATES[0]/CONSTANTS[12], CONSTANTS[13])+1.00000))+CONSTANTS[14]; resid[2] = RATES[4] - CONSTANTS[16]*(pow((STATES[2]+STATES[3])/CONSTANTS[17], CONSTANTS[18])/(1.00000+pow((STATES[2]+STATES[3])/CONSTANTS[17], CONSTANTS[18]))) - CONSTANTS[15]*STATES[4]; resid[3] = RATES[2] - ( CONSTANTS[20]*((1.00000+CONSTANTS[34])/(1.00000+pow((STATES[1]+STATES[4])/CONSTANTS[21], CONSTANTS[22])+CONSTANTS[34]))+ STATES[3]*1.00000) - CONSTANTS[19]*STATES[2]; resid[4] = RATES[3] - ALGEBRAIC[0] - CONSTANTS[29]*STATES[3]; } void computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC) { ALGEBRAIC[1] = ALGEBRAIC[0] - CONSTANTS[29]*STATES[3]; } void computeEssentialVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC) { ALGEBRAIC[0] = (CONDVAR[0]<0.00000 ? 0.00000 : CONDVAR[1]>=0.00000&&CONDVAR[2]<=0.00000 ? CONSTANTS[30] : CONDVAR[3]>0.00000 ? 0.00000 : 0.0/0.0); } void getStateInformation(double* SI) { SI[0] = 1.0; SI[1] = 1.0; SI[2] = 1.0; SI[3] = 1.0; SI[4] = 1.0; } void computeRoots(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES, double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS) { CONDVAR[0] = VOI - CONSTANTS[31]; CONDVAR[1] = VOI - CONSTANTS[31]; CONDVAR[2] = VOI - (CONSTANTS[31]+CONSTANTS[32]); CONDVAR[3] = VOI - (CONSTANTS[31]+CONSTANTS[32]); }