Metabolic Component Library(MCL)
We present the Metabolic Component Library (MCL), an open-source library for the modelling of metabolic components and metabolic networks in CellML. | ![]() |
Key features are
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MCL was developed by Matthias König at the Charité Berlin with support from Randall Britten from the Auckland Bioengineering Institute and Maxwell Neal from the University of Washington. |
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Annotation of the metabolic components to biological ontologies was performed with SemGen developed by Dr. Maxwell Neal at the University of Washington. |
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The project was funded by the Virtual Liver Network (VLN). | ![]() |
Please try and report any questions or problems to
matthias.koenig[AT]charite.de Thanks and have fun The MCL team. |
Components
Substrate(s) : S (S1, S2, ...)Product(s) : P (P1, P2, ... )
Inhibitor(s) : I (I1, I2, ...)
Activator(s) : A (A1, A2, ...)
Modifier(s) : M (M1, M2, ...)
AllostericInhibitionEmpirical
![]() J [mM_per_second] S [mM] P [mM] I [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] n [dimensionless] Ki [mM] |
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Mechanisms UniUniRev_I |
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AllostericInhibitionMWC
![]() J [mM_per_second] S [mM] I [mM] V [mM_per_second] Km_S [mM] n [dimensionless] L [dimensionless] Ki [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
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BiIrrev
![]() J [mM_per_second] S1 [mM] S2 [mM] V [mM_per_second] Km_S1 [mM] Km_S2 [mM] |
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Mechanisms BiNullIrrev BiBiIrrev BiUniIrrev |
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CatalyticActivationIrrev
![]() J [mM_per_second] S [mM] A [mM] V [mM_per_second] Km_S [mM] Km_A [mM] |
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Mechanisms UniUniIrrev_A UniBiIrrev_A UniNullIrrev_A |
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CatalyticActivationRev
![]() J [mM_per_second] S [mM] P [mM] A [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] Km_A [mM] |
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Mechanisms UniUniRev_A |
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CompetitiveInhibitionIrrev
![]() J [mM_per_second] S [mM] I [mM] V [mM_per_second] Km_S [mM] Ki [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
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CompetitiveInhibitionRev
![]() J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] I [mM] Km_S [mM] Km_P [mM] Ki [mM] |
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Mechanisms UniUniRev_I |
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ConstantFluxIrrev
![]() J [mM_per_second] V [mM_per_second] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev BiBiIrrev BiUniIrrev |
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Hill1ModifierRev
![]() J [mM_per_second] S [mM] P [mM] M [mM] V [mM_per_second] Keq [dimensionless] Km_S [mM] Km_P [mM] Km_M [mM] a [dimensionless] h [dimensionless] |
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Mechanisms UniUniRev_M |
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Hill2ModifierRev
HillIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] Km_S [mM] n [dimensionless] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
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HillRev
![]() J [mM_per_second] S [mM] P [mM] V [mM_per_second] Keq [dimensionless] Km_S [mM] Km_P [mM] h [dimensionless] |
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Mechanisms UniUniRev |
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HyperbolicModifierIrrev
![]() J [mM_per_second] S [mM] M [mM] V [mM_per_second] Kd [mM] Km_S [mM] a [dimensionless] b [dimensionless] |
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Mechanisms UniNullIrrev_M UniUniIrrev_M UniBiIrrev_M |
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HyperbolicModifierRev
![]() J [mM_per_second] S [mM] P [mM] M [mM] V_f [mM_per_second] V_b [mM_per_second] Kd [mM] Km_S [mM] Km_P [mM] a [dimensionless] b [dimensionless] |
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Mechanisms UniUniRev_M |
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IsoUniUni
![]() J [mM_per_second] S [mM] P [mM] V [mM_per_second] Keq [dimensionless] Ki [mM] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev |
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MassActionBiBiRev
![]() J [mM_per_second] S1 [mM] S2 [mM] P1 [mM] P2 [mM] k_f [per_mM_per_second] k_b [per_mM_per_second] |
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Mechanisms BiBiRev |
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MassActionBiIrrev
![]() J [mM_per_second] S1 [mM] S2 [mM] k_f [per_mM_per_second] |
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Mechanisms BiNullIrrev BiBiIrrev BiUniIrrev |
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MassActionBiUniRev
![]() J [mM_per_second] S1 [mM] S2 [mM] P [mM] k_f [per_mM_per_second] k_b [per_second] |
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Mechanisms BiUniRev |
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MassActionUniBiRev
![]() J [mM_per_second] S [mM] P1 [mM] P2 [mM] k_f [per_second] k_b [per_mM_per_second] |
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Mechanisms UniBiRev |
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MassActionUniIrrev
![]() J [mM_per_second] S [mM] k_f [per_second] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
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MassActionUniUniRev
![]() J [mM_per_second] S [mM] P [mM] k_f [per_second] k_b [per_second] |
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Mechanisms UniUniRev |
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MichaelisMentenIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] Km_S [mM] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
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MichaelisMentenRev
![]() J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev |
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MixedActivationIrrev
![]() J [mM_per_second] S [mM] A [mM] V [mM_per_second] Kac [mM] Kas [mM] Km_S [mM] |
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Mechanisms UniUniIrrev_A UniBiIrrev_A UniNullIrrev_A |
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MixedActivationRev
![]() J [mM_per_second] S [mM] P [mM] A [mM] V_f [mM_per_second] V_b [mM_per_second] Kac [mM] Kas [mM] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev_A |
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MixedInhibitionIrrev
![]() J [mM_per_second] S [mM] I [mM] V [mM_per_second] Kis [mM] Kic [mM] Km_S [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
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MixedInhibitionRev
![]() J [mM_per_second] S [mM] P [mM] I [mM] V_f [mM_per_second] V_b [mM_per_second] Kis [mM] Kic [mM] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev_I |
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NoncompetitiveInhibitionIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] Km_S [mM] I [mM] Ki [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
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NoncompetitiveInhibitionRev
![]() J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] I [mM] Ki [mM] |
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Mechanisms UniUniRev_I |
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OrderedBiBi
OrderedBiUni
![]() J [mM_per_second] S1 [mM] S2 [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Keq [per_mM] Km_S1 [mM] Km_S2 [mM] Km_P [mM] Ki_S1 [mM] |
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Mechanisms BiUniRev |
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OrderedUniBi
![]() J [mM_per_second] S [mM] P1 [mM] P2 [mM] V_f [mM_per_second] V_b [mM_per_second] Keq [mM] Km_S [mM] Km_P1 [mM] Km_P2 [mM] Ki_P1 [mM] |
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Mechanisms UniBiRev |
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PingPongBiBi
SpecificActivationIrrev
![]() J [mM_per_second] S [mM] A [mM] V [mM_per_second] Km_S [mM] Km_A [mM] |
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Mechanisms UniUniIrrev_A UniBiIrrev_A UniNullIrrev_A |
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SpecificActivationRev
![]() J [mM_per_second] S [mM] P [mM] A [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] Km_A [mM] |
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Mechanisms UniUniRev_A |
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SubstrateActivationIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] K_sa [mM] K_sc [mM] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
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SubstrateInhibitionIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] I [mM] Km_S [mM] Ki [mM] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
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SubstrateInhibitionRev
![]() J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] Ki [mM] |
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Mechanisms UniUniRev |
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UncompetitiveInhibitionIrrev
![]() J [mM_per_second] S [mM] V [mM_per_second] I [mM] Km_S [mM] K_I [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
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