Location: Virtual Bacterial Photography @ fb8422a520b9 / Bioenvironment_LightDependentPhosphorylation_Cph8.cellml

Author:
Tommy Yu <tommy.yu@auckland.ac.nz>
Date:
2011-06-16 15:08:26+12:00
Desc:
Removed extra <br> in title.
Permanent Source URI:
https://models.cellml.org/w/mcoo001/virtualbacterialphotography/rawfile/fb8422a520b9635b0903bc7595334305ef205e3a/Bioenvironment_LightDependentPhosphorylation_Cph8.cellml
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<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" cmeta:id="Bioenvironment_LightDependentPhosphorylation_Cph8" name="Bioenvironment_LightDependentPhosphorylation_Cph8">
            
    <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
            <rdf:Description rdf:about="#Bioenvironment_LightDependentPhosphorylation_Cph8">
            <dc:creator xmlns:dc="http://purl.org/dc/elements/1.0/">
            <vCard:N xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
                <vCard:Family>Cooling</vCard:Family>
                <vCard:Given>Mike</vCard:Given>
            </vCard:N>
            <vCard:EMAIL xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
                <rdf:value>m.cooling@auckland.ac.nz</rdf:value>
                <rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
            </vCard:EMAIL>
            <vCard:ORG xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
                <vCard:Orgname>Auckland Bioengineering Institute</vCard:Orgname>
                <vCard:Orgunit>University of Auckland</vCard:Orgunit>
            </vCard:ORG>
            </dc:creator>
            </rdf:Description>
   </rdf:RDF>
   
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="svp_templates/Template_RxBoundR1BoundP1.cellml">
	<component component_ref="Template_RxBoundR1BoundP1" name="Template_RxBoundR1BoundP1"/>
	<units name="molecule_per_micrometer2_per_s" units_ref="molecule_per_micrometer2_per_s"/>
	<units name="molecule_per_micrometer2" units_ref="molecule_per_micrometer2"/>
	<units name="per_s" units_ref="per_s"/>
</import>

<connection>
	<map_components component_1="Bioenvironment_LightDependentPhosphorylation_Cph8" component_2="Template_RxBoundR1BoundP1"/>
	<map_variables variable_1="J" variable_2="J"/>
	<map_variables variable_1="k" variable_2="k"/>
	<map_variables variable_1="density" variable_2="density"/>
</connection>

<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="svp_templates/Template_LightDependentFirstOrderRateConstant.cellml">
	<component component_ref="Template_LightDependentFirstOrderRateConstant" name="Template_LightDependentFirstOrderRateConstant"/>
</import>

<connection>
	<map_components component_1="Bioenvironment_LightDependentPhosphorylation_Cph8" component_2="Template_LightDependentFirstOrderRateConstant"/>
	<map_variables variable_1="calculated_k" variable_2="k"/>
	<map_variables variable_1="kMax_lightIntensity" variable_2="kMax_lightIntensity"/>
	<map_variables variable_1="lightIntensity" variable_2="lightIntensity"/>
	<map_variables variable_1="kMax" variable_2="kMax"/>
</connection>

   <component name="Bioenvironment_LightDependentPhosphorylation_Cph8">
    <variable name="J" private_interface="in" public_interface="out" units="molecule_per_micrometer2_per_s"/>
    <variable name="density" private_interface="out" public_interface="in" units="molecule_per_micrometer2"/>
    <variable initial_value="0.75" name="kMax" private_interface="out" units="per_s"/>
    <variable name="calculated_k" private_interface="in" units="per_s"/>
    <variable name="k" private_interface="out" units="per_s"/>
    <variable name="lightIntensity" private_interface="out" public_interface="in" units="candela"/>
    <variable name="kMax_lightIntensity" private_interface="out" initial_value="100" units="candela"/>
    
    <math xmlns="http://www.w3.org/1998/Math/MathML">
    	<apply>
		<eq/>
		<ci>k</ci>
		<ci>calculated_k</ci>
	</apply>
    </math>		
   </component>
 
   <group>
    <relationship_ref relationship="encapsulation"/>
    <component_ref component="Bioenvironment_LightDependentPhosphorylation_Cph8">
      <component_ref component="Template_RxBoundR1BoundP1"/>
      <component_ref component="Template_LightDependentFirstOrderRateConstant"/>
    </component_ref>
   </group> 
     
</model>