Location: Virtual Bacterial Photography @ fb8422a520b9 / Chassis_EColi.cellml

Author:
Tommy Yu <tommy.yu@auckland.ac.nz>
Date:
2011-06-16 15:08:26+12:00
Desc:
Removed extra <br> in title.
Permanent Source URI:
https://models.cellml.org/w/mcoo001/virtualbacterialphotography/rawfile/fb8422a520b9635b0903bc7595334305ef205e3a/Chassis_EColi.cellml
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<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" cmeta:id="Chassis_EColi" name="Chassis_EColi">
            
    <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
            <rdf:Description rdf:about="#Chassis_EColi">
            <dc:creator xmlns:dc="http://purl.org/dc/elements/1.0/">
            <vCard:N xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
                <vCard:Family>Cooling</vCard:Family>
                <vCard:Given>Mike</vCard:Given>
            </vCard:N>
            <vCard:EMAIL xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
                <rdf:value>m.cooling@auckland.ac.nz</rdf:value>
                <rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
            </vCard:EMAIL>
            <vCard:ORG xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
                <vCard:Orgname>Auckland Bioengineering Institute</vCard:Orgname>
                <vCard:Orgunit>University of Auckland</vCard:Orgunit>
            </vCard:ORG>
            </dc:creator>
            </rdf:Description>
   </rdf:RDF>

  <import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="svp_templates/Template_Chassis_BoundedWellStirredBag.cellml">
    <units name="molecule_per_micrometer2_per_nM" units_ref="molecule_per_micrometer2_per_nM"/>
    <units name="femtoliter_per_micrometer2" units_ref="femtoliter_per_micrometer2"/>
    <units name="femtoliter" units_ref="femtoliter"/>
    <units name="micrometer2" units_ref="micrometer2"/>
    <component component_ref="Template_Chassis_BoundedWellStirredBag" name="Template_Chassis_BoundedWellStirredBag"/>
  </import>

   <component name="Chassis_EColi">
    <variable initial_value="1" name="cellVolume" private_interface="out" public_interface="out" units="femtoliter"/>
    <variable initial_value="6" name="cellSurfaceArea" private_interface="out" public_interface="out" units="micrometer2"/>
    <variable name="Ccm" private_interface="in" public_interface="out" units="molecule_per_micrometer2_per_nM"/>
    <variable name="Rva" private_interface="in" public_interface="out" units="femtoliter_per_micrometer2"/>
   </component>
 
   <group>
    <relationship_ref relationship="encapsulation"/>
    <component_ref component="Chassis_EColi">
      <component_ref component="Template_Chassis_BoundedWellStirredBag"/>
    </component_ref>
   </group> 
  
   <connection>
      <map_components component_1="Chassis_EColi" component_2="Template_Chassis_BoundedWellStirredBag"/>
      <map_variables variable_1="cellVolume" variable_2="bagVolume"/>
      <map_variables variable_1="cellSurfaceArea" variable_2="bagSurfaceArea"/>
      <map_variables variable_1="Rva" variable_2="bagVolumeToAreaRatio"/>
      <map_variables variable_1="Ccm" variable_2="bagConcentrationToDensityConversionFactor"/>
   </connection>
</model>