- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2011-08-25 15:38:48+12:00
- Desc:
- adding a simple SED-ML document describing a single simulation which simulates one action potential. Also adding a screenshot taken to illustrate the result of this simulation experiment when run in the SED-ML web tools.
- Permanent Source URI:
- https://models.cellml.org/w/miller/Walmsley_Rodriguez_2013/rawfile/2d7a47386e8d9d50163289b79564f948c7cc1fab/action-potential.xml
<?xml version="1.0" encoding="utf-8"?>
<sedML xmlns="http://sed-ml.org/"
xmlns:math="http://www.w3.org/1998/Math/MathML" level="1" version="1">
<listOfSimulations>
<uniformTimeCourse id="simulation1"
initialTime="0" outputStartTime="0" outputEndTime="1000"
numberOfPoints="1000" >
<algorithm kisaoID="KISAO:0000019"/>
</uniformTimeCourse>
</listOfSimulations>
<listOfModels>
<model id="model1" name="ORd" language="urn:sedml:language:cellml" source="http://models.cellml.org/w/andre/SAN-ORd/@@rawfile/dd8799c44edbea63a2b6b9754bc889dd24c2e6d1/Ohara_Rudy_2011.cellml"/>
</listOfModels>
<listOfTasks>
<task id="task1" name="Action Potential" modelReference="model1" simulationReference="simulation1"/>
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="time" name="time">
<listOfVariables>
<variable id="t" taskReference="task1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" />
</listOfVariables>
<math:math>
<math:ci>t</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="Vm" name="Membrane Potential">
<listOfVariables>
<variable id="v" taskReference="task1" target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='v']" />
</listOfVariables>
<math:math>
<math:ci>v</math:ci>
</math:math>
</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
<plot2D id="plot1" name="Action Potential">
<listOfCurves>
<curve id="c1" logX="false" logY="false" xDataReference="time" yDataReference="Vm" />
</listOfCurves>
</plot2D>
</listOfOutputs>
</sedML>
