- Author:
- Ting Yu <ting.yu@auckland.ac.nz>
- Date:
- 2014-05-05 11:11:02+12:00
- Desc:
- Change the unit from dimensionless to TODO.
- Permanent Source URI:
- https://models.cellml.org/workspace/194/rawfile/c560868b736d95fd544954a4a3d5875175c194dc/cellml/Respiration.cellml
<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" name="Respiration">
<component name="Respiration">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply id="1">
<eq/>
<ci>XHB
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">15
</cn>
</apply>
<apply id="2">
<eq/>
<ci>PBA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">760
</cn>
</apply>
<apply id="3">
<eq/>
<ci>PBL
</ci>
<apply>
<minus/>
<ci>PBA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">47
</cn>
</apply>
</apply>
<apply id="4">
<eq/>
<ci>VAL
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">3
</cn>
</apply>
<apply id="5">
<eq/>
<ci>MRCO
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.2318
</cn>
</apply>
<apply id="6">
<eq/>
<ci>MRO2
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.2591
</cn>
</apply>
<apply id="7">
<eq/>
<apply>
<diff/>
<bvar>
<ci>t
</ci>
</bvar>
<ci>FCOA
</ci>
</apply>
<apply>
<divide/>
<apply>
<plus/>
<apply>
<times/>
<ci>VI
</ci>
<apply>
<minus/>
<ci>FCOI
</ci>
<ci>FCOA
</ci>
</apply>
</apply>
<apply>
<times/>
<apply>
<divide/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">863
</cn>
<apply>
<minus/>
<ci>PBA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">47
</cn>
</apply>
</apply>
<ci>QCO
</ci>
<apply>
<minus/>
<ci>UCOV
</ci>
<ci>UCOA
</ci>
</apply>
</apply>
</apply>
<ci>VAL
</ci>
</apply>
</apply>
<apply id="8">
<eq/>
<apply>
<diff/>
<bvar>
<ci>t
</ci>
</bvar>
<ci>FO2A
</ci>
</apply>
<apply>
<divide/>
<apply>
<plus/>
<apply>
<times/>
<ci>VI
</ci>
<apply>
<minus/>
<ci>FO2I
</ci>
<ci>FO2A
</ci>
</apply>
</apply>
<apply>
<times/>
<apply>
<divide/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">863
</cn>
<apply>
<minus/>
<ci>PBA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">47
</cn>
</apply>
</apply>
<ci>QCO
</ci>
<apply>
<minus/>
<ci>UO2V
</ci>
<ci>UO2A
</ci>
</apply>
</apply>
</apply>
<ci>VAL
</ci>
</apply>
</apply>
<apply id="9">
<eq/>
<apply>
<diff/>
<bvar>
<ci>t
</ci>
</bvar>
<ci>UCOV
</ci>
</apply>
<apply>
<divide/>
<apply>
<plus/>
<ci>MRCO
</ci>
<apply>
<times/>
<ci>QCO
</ci>
<apply>
<minus/>
<ci>UCOA
</ci>
<ci>UCOV
</ci>
</apply>
</apply>
</apply>
<ci>VTW
</ci>
</apply>
</apply>
<apply id="10">
<eq/>
<apply>
<diff/>
<bvar>
<ci>t
</ci>
</bvar>
<ci>UO2V
</ci>
</apply>
<apply>
<divide/>
<apply>
<plus/>
<apply>
<minus/>
<ci>MRO2
</ci>
</apply>
<apply>
<times/>
<ci>QCO
</ci>
<apply>
<minus/>
<ci>UO2A
</ci>
<ci>UO2V
</ci>
</apply>
</apply>
</apply>
<ci>VTW
</ci>
</apply>
</apply>
<apply id="11">
<eq/>
<ci>UCOA
</ci>
<apply>
<plus/>
<apply>
<times/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.0006732
</cn>
<ci>PCOA
</ci>
</apply>
<apply>
<times/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.02226
</cn>
<ci>XCO3
</ci>
</apply>
</apply>
</apply>
<apply id="12">
<eq/>
<ci>UO2A
</ci>
<apply>
<plus/>
<apply>
<times/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.00003168
</cn>
<ci>PO2A
</ci>
</apply>
<ci>UHBO
</ci>
</apply>
</apply>
<apply id="13">
<eq/>
<apply>
<diff/>
<bvar>
<ci>t
</ci>
</bvar>
<ci>VI
</ci>
</apply>
<apply>
<divide/>
<apply>
<minus/>
<apply>
<times/>
<ci>VR
</ci>
<ci>VI0
</ci>
</apply>
<ci>VI
</ci>
</apply>
<ci>TRSP1
</ci>
</apply>
</apply>
<apply id="14">
<eq/>
<ci>k1
</ci>
<piecewise>
<piece>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.22
</cn>
<apply>
<leq/>
<ci>PHA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">7.4
</cn>
</apply>
</piece>
<otherwise>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.0258
</cn>
</otherwise>
</piecewise>
</apply>
<apply id="15">
<eq/>
<ci>k6
</ci>
<piecewise>
<piece>
<apply>
<minus/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">12.734
</cn>
</apply>
<apply>
<leq/>
<ci>PHA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">7.4
</cn>
</apply>
</piece>
<otherwise>
<apply>
<minus/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">5.003
</cn>
</apply>
</otherwise>
</piecewise>
</apply>
<apply id="16">
<eq/>
<ci>k3
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.58
</cn>
</apply>
<apply id="17">
<eq/>
<ci>k4
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">3.496
</cn>
</apply>
<apply id="18">
<eq/>
<ci>k2
</ci>
<piecewise>
<piece>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">1
</cn>
<apply>
<gt/>
<ci>PCOA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">40
</cn>
</apply>
</piece>
<otherwise>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.0396
</cn>
</otherwise>
</piecewise>
</apply>
<apply id="19">
<eq/>
<ci>k5
</ci>
<piecewise>
<piece>
<apply>
<minus/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">32.079999999999998
</cn>
</apply>
<apply>
<gt/>
<ci>PCOA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">40
</cn>
</apply>
</piece>
<otherwise>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">160.110000000000014
</cn>
</otherwise>
</piecewise>
</apply>
<apply id="20">
<eq/>
<ci>VR
</ci>
<apply>
<max/>
<apply>
<plus/>
<apply>
<times/>
<ci>k1
</ci>
<ci>H
</ci>
</apply>
<apply>
<times/>
<ci>k2
</ci>
<apply>
<plus/>
<ci>k3
</ci>
<apply>
<divide/>
<ci>k4
</ci>
<apply>
<minus/>
<ci>PO2A
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">32
</cn>
</apply>
</apply>
</apply>
<apply>
<plus/>
<ci>PCOA
</ci>
<ci>k5
</ci>
</apply>
</apply>
<ci>k6
</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0
</cn>
</apply>
</apply>
<apply id="21">
<eq/>
<ci>VI0
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">5
</cn>
</apply>
<apply id="22">
<eq/>
<ci>H
</ci>
<apply>
<power/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">10
</cn>
<apply>
<minus/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">9
</cn>
<ci>PHA
</ci>
</apply>
</apply>
</apply>
<apply id="23">
<eq/>
<ci>f
</ci>
<apply>
<power/>
<apply>
<minus/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">1
</cn>
<apply>
<exp/>
<apply>
<times/>
<apply>
<minus/>
<ci>PO2A
</ci>
</apply>
<ci>g
</ci>
</apply>
</apply>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">2
</cn>
</apply>
</apply>
<apply id="24">
<eq/>
<ci>g
</ci>
<apply>
<minus/>
<apply>
<plus/>
<apply>
<minus/>
<apply>
<times/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.0066815
</cn>
<apply>
<power/>
<ci>PHA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">3
</cn>
</apply>
</apply>
<apply>
<times/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.10098
</cn>
<apply>
<power/>
<ci>PHA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">2
</cn>
</apply>
</apply>
</apply>
<apply>
<times/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.44921
</cn>
<ci>PHA
</ci>
</apply>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.454
</cn>
</apply>
</apply>
<apply id="25">
<eq/>
<ci>UHBO
</ci>
<apply>
<times/>
<ci>UHB
</ci>
<ci>f
</ci>
</apply>
</apply>
<apply id="26">
<eq/>
<ci>DCLA
</ci>
<apply>
<minus/>
<ci>XCO3
</ci>
<ci>STBC
</ci>
</apply>
</apply>
<apply id="27">
<eq/>
<ci>UHB
</ci>
<apply>
<divide/>
<ci>XHB
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">75
</cn>
</apply>
</apply>
<apply id="28">
<eq/>
<ci>PCOA
</ci>
<apply>
<times/>
<ci>FCOA
</ci>
<apply>
<minus/>
<ci>PBA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">47
</cn>
</apply>
</apply>
</apply>
<apply id="29">
<eq/>
<ci>PO2A
</ci>
<apply>
<times/>
<ci>FO2A
</ci>
<apply>
<minus/>
<ci>PBA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">47
</cn>
</apply>
</apply>
</apply>
<apply id="30">
<eq/>
<ci>PHA
</ci>
<apply>
<plus/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">6.1
</cn>
<apply>
<log/>
<apply>
<divide/>
<ci>XCO3
</ci>
<apply>
<times/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.03
</cn>
<ci>PCOA
</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply id="31">
<eq/>
<ci>XCO0
</ci>
<apply>
<plus/>
<apply>
<minus/>
<ci>STBC
</ci>
<apply>
<times/>
<apply>
<plus/>
<apply>
<times/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.527
</cn>
<ci>XHB
</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">3.7
</cn>
</apply>
<apply>
<minus/>
<ci>PHA
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">7.4
</cn>
</apply>
</apply>
</apply>
<apply>
<divide/>
<apply>
<times/>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.375
</cn>
<apply>
<minus/>
<ci>UHB
</ci>
<ci>UHBO
</ci>
</apply>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.02226
</cn>
</apply>
</apply>
</apply>
<apply id="32">
<eq/>
<apply>
<diff/>
<bvar>
<ci>t
</ci>
</bvar>
<ci>XCO3
</ci>
</apply>
<apply>
<divide/>
<apply>
<minus/>
<ci>XCO0
</ci>
<ci>XCO3
</ci>
</apply>
<ci>TRSP
</ci>
</apply>
</apply>
</math>
<variable name="XHB" units="TODO"/>
<variable name="PBA" units="TODO"/>
<variable name="PBL" units="TODO"/>
<variable name="VAL" units="TODO"/>
<variable name="MRCO" units="TODO"/>
<variable name="MRO2" units="TODO"/>
<variable name="t" public_interface="in" units="TODO"/>
<variable initial_value="0.0561" name="FCOA" units="TODO"/>
<variable initial_value="0.1473" name="FO2A" units="TODO"/>
<variable initial_value="5" name="VI" units="TODO"/>
<variable name="FCOI" units="TODO"/>
<variable name="FO2I" units="TODO"/>
<variable initial_value="0.6075" name="UCOV" units="TODO"/>
<variable name="QCO" public_interface="in" units="TODO"/>
<variable name="UCOA" units="TODO"/>
<variable name="VTW" public_interface="in" units="TODO"/>
<variable initial_value="0.1515" name="UO2V" units="TODO"/>
<variable name="UO2A" units="TODO"/>
<variable name="VR" units="TODO"/>
<variable name="VI0" units="TODO"/>
<variable name="TRSP1" public_interface="in" units="TODO"/>
<variable name="k1" units="TODO"/>
<variable name="PHA" public_interface="out" units="TODO"/>
<variable name="k6" units="TODO"/>
<variable name="k3" units="TODO"/>
<variable name="k4" units="TODO"/>
<variable name="k2" units="TODO"/>
<variable name="PCOA" public_interface="out" units="TODO"/>
<variable name="H" units="TODO"/>
<variable name="PO2A" units="TODO"/>
<variable name="f" units="TODO"/>
<variable name="UHBO" units="TODO"/>
<variable name="UHB" units="TODO"/>
<variable name="g" units="TODO"/>
<variable name="DCLA" public_interface="out" units="TODO"/>
<variable initial_value="24" name="XCO3" public_interface="out" units="TODO"/>
<variable name="STBC" public_interface="in" units="TODO"/>
<variable name="XCO0" units="TODO"/>
<variable name="TRSP" public_interface="in" units="TODO"/>
<variable name="k5" units="TODO"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply id="33">
<eq/>
<ci>FCOI
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0
</cn>
</apply>
<apply id="34">
<eq/>
<ci>FO2I
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">0.21
</cn>
</apply>
</math>
</component>
<component name="Inputs">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply id="38">
<eq/>
<ci>TRSP
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">1
</cn>
</apply>
<apply id="39">
<eq/>
<ci>TRSP1
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">2
</cn>
</apply>
</math>
<variable name="TRSP1" public_interface="out" units="TODO"/>
<variable name="TRSP" public_interface="out" units="TODO"/>
</component>
<component name="InputsDummies2">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply id="35">
<eq/>
<ci>STBC
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">24
</cn>
</apply>
<apply id="36">
<eq/>
<ci>QCO
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">5
</cn>
</apply>
<apply id="37">
<eq/>
<ci>VTW
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">31
</cn>
</apply>
<apply id="38">
<eq/>
<ci>TRSP
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">1
</cn>
</apply>
<apply id="39">
<eq/>
<ci>TRSP1
</ci>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="TODO">2
</cn>
</apply>
</math>
<variable name="STBC" public_interface="out" units="TODO"/>
<variable name="QCO" public_interface="out" units="TODO"/>
<variable name="VTW" public_interface="out" units="TODO"/>
<variable name="TRSP1" public_interface="out" units="TODO"/>
<variable name="TRSP" public_interface="out" units="TODO"/>
<variable initial_value="0" name="t" public_interface="out" units="TODO"/>
</component>
<connection>
<map_components component_1="Respiration" component_2="Inputs"/>
<map_variables variable_1="TRSP" variable_2="TRSP"/>
<map_variables variable_1="TRSP1" variable_2="TRSP1"/>
</connection>
<connection>
<map_components component_1="Respiration" component_2="InputsDummies2"/>
<map_variables variable_1="STBC" variable_2="STBC"/>
<map_variables variable_1="QCO" variable_2="QCO"/>
<map_variables variable_1="VTW" variable_2="VTW"/>
<map_variables variable_1="t" variable_2="t"/>
</connection>
<units name="TODO">
<unit units="dimensionless"/>
</units>
</model>
