Location: semantic-annotation @ 0d001436fb31 / SEDML / protocol1D_weinstein_2000.rdf

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-02-08 00:13:31+13:00
Desc:
updated a minor typo in the protocol4B sedml
Permanent Source URI:
https://models.cellml.org/workspace/267/rawfile/0d001436fb31391c678cc5d3d51e2f92a40e8f5b/SEDML/protocol1D_weinstein_2000.rdf

  <rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" 
           xmlns:ro="http://www.obofoundry.org/ro/ro.owl#" 
           xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" 
           xmlns:semsim="http://www.bhi.washington.edu/SemSim#" 
           xmlns:dcterms="http://purl.org/dc/terms/">
    
			<rdf:Description rdf:about="protocol1D_weinstein_2000.sedml#Concentrations.HCO3_i">
				<semsim:isComputationalComponentFor>
					<rdf:Description rdf:about="#property_0">
						<semsim:physicalPropertyOf>
							<rdf:Description rdf:about="#entity_0">
								<ro:part_of>
									<rdf:Description rdf:about="#entity_1">
										<ro:part_of>
											<rdf:Description rdf:about="#entity_2">
												<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_70982" />
											</rdf:Description>
										</ro:part_of>
										<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
									</rdf:Description>
								</ro:part_of>
								<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17544" />
							</rdf:Description>
						</semsim:physicalPropertyOf>
						<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
					</rdf:Description>
				</semsim:isComputationalComponentFor>
				<dcterms:description>concentration of biocarbonate in the portion of cytosol in epithelial cell of collecting duct of renal tubule compartment</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol1D_weinstein_2000.sedml#Concentrations.HCO3_e">
				<semsim:isComputationalComponentFor>
					<rdf:Description rdf:about="#property_3">
						<semsim:physicalPropertyOf>
							<rdf:Description rdf:about="#entity_3">
								<ro:part_of>
									<rdf:Description rdf:about="#entity_4">
										<ro:part_of rdf:resource="#entity_2" />
											<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
									</rdf:Description>
								</ro:part_of>
								<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17544" />
							</rdf:Description>
						</semsim:physicalPropertyOf>
						<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
					</rdf:Description>
				</semsim:isComputationalComponentFor>
				<dcterms:description>concentration of bicarbonate in the portion of tissue fluid in epithelial cell of collecting duct of renal tubule compartment</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol1D_weinstein_2000.sedml#AE1.J_HCO3">
			  <semsim:isComputationalComponentFor>
				<rdf:Description rdf:about="#property_4">
				  <semsim:physicalPropertyOf>
					<rdf:Description rdf:about="#process_0" dcterms:description="">
					  <semsim:hasMediatorParticipant>
						<rdf:Description rdf:about="#mediator_0">
						  <semsim:hasPhysicalEntityReference>
							<rdf:Description rdf:about="#entity_5">
							  <ro:part_of rdf:resource="#entity_2" />
							  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
							</rdf:Description>
						  </semsim:hasPhysicalEntityReference>
						</rdf:Description>
					  </semsim:hasMediatorParticipant>
					  <semsim:hasSinkParticipant>
						<rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
						  <semsim:hasPhysicalEntityReference rdf:resource="#entity_3" />
						</rdf:Description>
					  </semsim:hasSinkParticipant>
					  <semsim:hasSourceParticipant>
						<rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
						  <semsim:hasPhysicalEntityReference rdf:resource="#entity_0" />
						</rdf:Description>
					  </semsim:hasSourceParticipant>
					  <semsim:name>HCO3- flow across basolateral membrane</semsim:name>
					</rdf:Description>
				  </semsim:physicalPropertyOf>
				  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593" />
				</rdf:Description>
			  </semsim:isComputationalComponentFor>
			  <dcterms:description>net flux (efflux) of bicarbonate from portion of cytosol in epithelial cell of collecting duct of renal tubule to portion of tissue fluid in epithelial cell of collecting duct of renal tubule compartment across basolateral plasma membrane</dcterms:description>
			</rdf:Description>
			<rdf:Description rdf:about="protocol1D_weinstein_2000.sedml#environment.time">
				<bqbiol:is rdf:resource="http://identifiers.org/opb/OPB_01023" />
			</rdf:Description>
			<rdf:Description rdf:about="protocol1D_weinstein_2000.sedml#weinstein_2000_1D">
				<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
				<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
				<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
				<ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/PR_P23562" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
				<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
				<bqbiol:isTime rdf:resource="http://identifiers.org/opb/OPB_01023" />    
			</rdf:Description>
  </rdf:RDF>