- Author:
- Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
- Date:
- 2020-03-03 10:28:55+13:00
- Desc:
- adding protocol 11's relevant files
- Permanent Source URI:
- https://models.cellml.org/workspace/267/rawfile/2cab55e667b64f00306b0a79792f9317acfb6cec/SEDML/protocol1G_weinstein_2000.rdf
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"
xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:semsim="http://www.bhi.washington.edu/SemSim#"
xmlns:dcterms="http://purl.org/dc/terms/">
<rdf:Description rdf:about="protocol1G_weinstein_2000.sedml#AE1.Jb_influx">
<semsim:isComputationalComponentFor>
<rdf:Description rdf:about="#property_4">
<semsim:physicalPropertyOf>
<rdf:Description rdf:about="#process_0" dcterms:description="">
<semsim:hasMediatorParticipant>
<rdf:Description rdf:about="#mediator_0">
<semsim:hasPhysicalEntityReference>
<rdf:Description rdf:about="#entity_5">
<ro:part_of>
<rdf:Description rdf:about="#entity_2">
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_70982" />
</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
</rdf:Description>
</semsim:hasPhysicalEntityReference>
</rdf:Description>
</semsim:hasMediatorParticipant>
<semsim:hasSinkParticipant>
<rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
<semsim:hasPhysicalEntityReference>
<rdf:Description rdf:about="#entity_0">
<ro:part_of>
<rdf:Description rdf:about="#entity_1">
<ro:part_of rdf:resource="#entity_2" />
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17544" />
</rdf:Description>
</semsim:hasPhysicalEntityReference>
</rdf:Description>
</semsim:hasSinkParticipant>
<semsim:hasSourceParticipant>
<rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
<semsim:hasPhysicalEntityReference>
<rdf:Description rdf:about="#entity_3">
<ro:part_of>
<rdf:Description rdf:about="#entity_4">
<ro:part_of rdf:resource="#entity_2" />
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17544" />
</rdf:Description>
</semsim:hasPhysicalEntityReference>
</rdf:Description>
</semsim:hasSourceParticipant>
<semsim:name>HCO3- flow from across basolateral membrane</semsim:name>
</rdf:Description>
</semsim:physicalPropertyOf>
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>flux of bicarbonate from portion of tissue fluid in epithelial cell of collecting duct of renal tubule to portion of cytoosl in epithelial cell of collecting duct of renal tubule compartment across basolateral plasma membrane</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="protocol1G_weinstein_2000.sedml#Concentrations.HCO3_i">
<semsim:isComputationalComponentFor>
<rdf:Description rdf:about="#property_0">
<semsim:physicalPropertyOf rdf:resource="#entity_0" />
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>concentration of bicarbonate in the portion of cytosol in epithelial cell of collecting duct of renal tubule compartment</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="protocol1G_weinstein_2000.sedml#Concentrations.HCO3_e">
<semsim:isComputationalComponentFor>
<rdf:Description rdf:about="#property_1">
<semsim:physicalPropertyOf rdf:resource="#entity_3" />
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>concentration of bicarbonate in the portion of tissue fluid in epithelial cell of collecting duct of renal tubule compartment</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="protocol1G_weinstein_2000.sedml#environment.time">
<bqbiol:is rdf:resource="http://identifiers.org/opb/OPB_01023" />
</rdf:Description>
<rdf:Description rdf:about="protocol1G_weinstein_2000.sedml#weinstein_2000_1G">
<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
<ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/PR_P23562" />
<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
<bqbiol:isTime rdf:resource="http://identifiers.org/opb/OPB_01023" />
</rdf:Description>
</rdf:RDF>
