Location: semantic-annotation @ 2cab55e667b6 / SEDML / protocol3C_chang_fujita_1999.rdf

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-03-03 10:28:55+13:00
Desc:
adding protocol 11's relevant files
Permanent Source URI:
https://models.cellml.org/workspace/267/rawfile/2cab55e667b64f00306b0a79792f9317acfb6cec/SEDML/protocol3C_chang_fujita_1999.rdf
Compare... Download Source 

  <rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" 
           xmlns:ro="http://www.obofoundry.org/ro/ro.owl#" 
           xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" 
           xmlns:semsim="http://www.bhi.washington.edu/SemSim#" 
           xmlns:dcterms="http://purl.org/dc/terms/">
		   
		<rdf:Description rdf:about="protocol3C_chang_fujita_1999.sedml#reaction_constants.Na">
		  <semsim:isComputationalComponentFor>
			<rdf:Description rdf:about="#property_2">
			  <semsim:physicalPropertyOf>
				<rdf:Description rdf:about="#entity_0">
				  <ro:part_of>
					<rdf:Description rdf:about="#entity_1">
					  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_280787" />
					</rdf:Description>
				  </ro:part_of>
				  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
				</rdf:Description>
			  </semsim:physicalPropertyOf>
			  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
			</rdf:Description>
		  </semsim:isComputationalComponentFor>
		  <dcterms:description>Concentration of sodium in the portion of renal filtrate in proximal convoluted tubule compartment</dcterms:description>
		</rdf:Description>
		<rdf:Description rdf:about="protocol3C_chang_fujita_1999.sedml#reaction_constants.Na_">
		  <semsim:isComputationalComponentFor>
			<rdf:Description rdf:about="#property_3">
			  <semsim:physicalPropertyOf>
				<rdf:Description rdf:about="#entity_2">
				  <ro:part_of>
					<rdf:Description rdf:about="#entity_3">
					  <ro:part_of>
						<rdf:Description rdf:about="#entity_4">
						  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_70973" />
						</rdf:Description>
					  </ro:part_of>
					  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
					</rdf:Description>
				  </ro:part_of>
				  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
				</rdf:Description>
			  </semsim:physicalPropertyOf>
			  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
			</rdf:Description>
		  </semsim:isComputationalComponentFor>
		  <dcterms:description>Concentration of sodium in the portion of cytosol in epithelial cell of proximal tubule compartment</dcterms:description>
		</rdf:Description>
		<rdf:Description rdf:about="protocol3C_chang_fujita_1999.sedml#reaction_constants.J_Na">
		  <semsim:isComputationalComponentFor>
			<rdf:Description rdf:about="#property_4">
			  <semsim:physicalPropertyOf>
				<rdf:Description rdf:about="#process_0" dcterms:description="">
				  <semsim:hasMediatorParticipant>
					<rdf:Description rdf:about="#mediator_0">
					  <semsim:hasPhysicalEntityReference>
						<rdf:Description rdf:about="#entity_5">
						  <ro:part_of>
							<rdf:Description rdf:about="#entity_6">
							  <ro:part_of rdf:resource="#entity_4" />
							  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
							</rdf:Description>
						  </ro:part_of>
						  <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/PR_P26433" />
						</rdf:Description>
					  </semsim:hasPhysicalEntityReference>
					</rdf:Description>
				  </semsim:hasMediatorParticipant>
				  <semsim:hasSinkParticipant>
					<rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
					  <semsim:hasPhysicalEntityReference rdf:resource="#entity_2" />
					</rdf:Description>
				  </semsim:hasSinkParticipant>
				  <semsim:hasSourceParticipant>
					<rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
					  <semsim:hasPhysicalEntityReference rdf:resource="#entity_0" />
					</rdf:Description>
				  </semsim:hasSourceParticipant>
				  <semsim:name>Na+ flow through sodium/hydrogen exchanger 3</semsim:name>
				</rdf:Description>
			  </semsim:physicalPropertyOf>
			  <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593" />
			</rdf:Description>
		  </semsim:isComputationalComponentFor>
		  <dcterms:description>Flux of sodium from portion of renal filtrate in proximal convoluted tubule to portion of cytosol in epithelial cell of proximal tubule through sodium/hydrogen exchanger 3</dcterms:description>
		</rdf:Description>
		<rdf:Description rdf:about="protocol3C_chang_fujita_1999.sedml#chang_fujita_1999_3C">
		  <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
		  <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_74550" />
		  <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
		  <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
		  <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_70981" />
		  <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_17721" />
		  <ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/PR_P59158" />
		  <bqbiol:isTime rdf:resource="http://identifiers.org/opb/OPB_01023" />
		</rdf:Description>
  </rdf:RDF>