- Author:
- Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
- Date:
- 2020-04-16 15:28:59+12:00
- Desc:
- added two protocols in protocolSEDML
- Permanent Source URI:
- https://models.cellml.org/workspace/267/rawfile/701991c9d7082913947fd9130b5c8892e2ef9aea/NaHCO3/NBC_test.cellml
<?xml version="1.0" encoding="UTF-8"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqs="http://www.cellml.org/bqs/1.0#" xmlns:semsim="http://www.bhi.washington.edu/SemSim#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" name="Ostby_2009_NBC" cmeta:id="Ostby_2009_NBC">
<import xlink:href="Units/Units.cellml">
<units name="mV" units_ref="mV" />
</import>
<import xlink:href="Units/Units.cellml">
<units name="mM_per_s" units_ref="mM_per_s" />
</import>
<import xlink:href="Units/Units.cellml">
<units name="umol_per_s_per_cm2" units_ref="umol_per_s_per_cm2" />
</import>
<import xlink:href="Units/Units.cellml">
<units name="mM" units_ref="mM" />
</import>
<import xlink:href="Ostby_2009_NBC.cellml">
<component name="NBC" component_ref="NBC" />
</import>
<component name="environment">
<variable cmeta:id="environment.time" name="time" public_interface="out" units="second" />
</component>
<component name="concentrations">
<variable cmeta:id="concentrations.time" name="time" public_interface="in" units="second" />
<variable cmeta:id="concentrations.V_m" initial_value="-0.032" name="V_m" public_interface="out" units="mV" />
<variable cmeta:id="concentrations.Na_int" initial_value="15.0" name="Na_int" public_interface="out" units="mM" />
<variable cmeta:id="concentrations.Na_ext" initial_value="146.0" name="Na_ext" public_interface="out" units="mM" />
<variable cmeta:id="concentrations.HCO3_int" initial_value="9.0" name="HCO3_int" public_interface="out" units="mM" />
<variable cmeta:id="concentrations.HCO3_ext" initial_value="15.0" name="HCO3_ext" public_interface="out" units="mM" />
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq />
<apply>
<diff />
<bvar>
<ci>time</ci>
</bvar>
<ci>Na_int</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="mM_per_s">1.0</cn>
</apply>
</math>
</component>
<component name="fluxes">
<variable cmeta:id="fluxes.J_NBC_Na" name="J_NBC_Na" public_interface="in" units="umol_per_s_per_cm2" />
<variable cmeta:id="fluxes.J_NBC_HCO3" name="J_NBC_HCO3" public_interface="in" units="umol_per_s_per_cm2" />
</component>
<connection>
<map_components component_1="concentrations" component_2="NBC" />
<map_variables variable_1="V_m" variable_2="V_m" />
<map_variables variable_1="Na_ext" variable_2="Na_ext" />
<map_variables variable_1="HCO3_int" variable_2="HCO3_int" />
<map_variables variable_1="HCO3_ext" variable_2="HCO3_ext" />
<map_variables variable_1="Na_int" variable_2="Na_int" />
</connection>
<connection>
<map_components component_1="NBC" component_2="fluxes" />
<map_variables variable_1="J_NBC_Na" variable_2="J_NBC_Na" />
<map_variables variable_1="J_NBC_HCO3" variable_2="J_NBC_HCO3" />
</connection>
<connection>
<map_components component_1="environment" component_2="concentrations" />
<map_variables variable_1="time" variable_2="time" />
</connection>
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:ro="http://www.obofoundry.org/ro/ro.owl#" xmlns:opb="http://bhi.washington.edu/OPB#">
<rdf:Description rdf:about="#Ostby_2009_NBC" semsim:modelId="Ostby_2009_NBC" semsim:modelName="Ostby_2009_NBC" />
</rdf:RDF>
</model>
