- Author:
- Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
- Date:
- 2020-02-04 15:29:11+13:00
- Desc:
- updated annotations for the protocol5B
- Permanent Source URI:
- https://models.cellml.org/workspace/267/rawfile/ba7d84022e93980a45d131c4d474a5bf2846425a/SEDML/protocol1F_chang_fujita_b_1999.rdf
<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"
xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:semsim="http://www.bhi.washington.edu/SemSim#"
xmlns:dcterms="http://purl.org/dc/terms/">
<rdf:Description rdf:about="protocol1F_chang_fujita_b_1999.sedml#mc_sodium_flux.C_m_Na">
<semsim:isComputationalComponentFor>
<rdf:Description rdf:about="#property_4">
<semsim:physicalPropertyOf>
<rdf:Description rdf:about="#entity_0">
<ro:part_of>
<rdf:Description rdf:about="#entity_1">
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_280791" />
</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
</rdf:Description>
</semsim:physicalPropertyOf>
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>Concentration of sodium in the portion of renal filtrate in distal convoluted tubule compartment</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="protocol1F_chang_fujita_b_1999.sedml#mc_sodium_flux.J_mc_Na">
<semsim:isComputationalComponentFor>
<rdf:Description rdf:about="#property_3">
<semsim:physicalPropertyOf>
<rdf:Description rdf:about="#process_0" dcterms:description="">
<semsim:hasMediatorParticipant>
<rdf:Description rdf:about="#mediator_0">
<semsim:hasPhysicalEntityReference>
<rdf:Description rdf:about="#entity_5">
<ro:part_of>
<rdf:Description rdf:about="#entity_6">
<ro:part_of>
<rdf:Description rdf:about="#entity_4">
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_70981" />
</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/PR_P55018" />
</rdf:Description>
</semsim:hasPhysicalEntityReference>
</rdf:Description>
</semsim:hasMediatorParticipant>
<semsim:hasSinkParticipant>
<rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
<semsim:hasPhysicalEntityReference>
<rdf:Description rdf:about="#entity_2">
<ro:part_of>
<rdf:Description rdf:about="#entity_3">
<ro:part_of rdf:resource="#entity_4" />
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101" />
</rdf:Description>
</semsim:hasPhysicalEntityReference>
</rdf:Description>
</semsim:hasSinkParticipant>
<semsim:hasSourceParticipant>
<rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
<semsim:hasPhysicalEntityReference rdf:resource="#entity_0" />
</rdf:Description>
</semsim:hasSourceParticipant>
<semsim:name>Na+ flow across Na-Cl cotransporter</semsim:name>
</rdf:Description>
</semsim:physicalPropertyOf>
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>Flux of sodium from portion of renal filtrate in distal convoluted tubule compartment to portion of cytosol in epithelial cell of distal tubule compartment across Na-Cl cotransporter</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="protocol1F_chang_fujita_b_1999.sedml#mc_sodium_flux.C_c_Na">
<semsim:isComputationalComponentFor>
<rdf:Description rdf:about="#property_5">
<semsim:physicalPropertyOf rdf:resource="#entity_2" />
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>Concentration of sodium in the portion of cytosol in epithelial cell of distal tubule compartment</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="protocol1F_chang_fujita_b_1999.sedml#environment.time">
<bqbiol:is rdf:resource="http://identifiers.org/opb/OPB_01023" />
</rdf:Description>
<rdf:Description rdf:about="protocol1F_chang_fujita_b_1999.sedml#chang_fujita_b_1999_1F">
<ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000066" />
<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84669" />
<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836" />
<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_74550" />
<ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_9673" />
<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_17721" />
</rdf:Description>
</rdf:RDF>