Location: semantic-annotation @ ba7d84022e93 / protocolSEDML.xml

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-02-04 15:29:11+13:00
Desc:
updated annotations for the protocol5B
Permanent Source URI:
https://models.cellml.org/workspace/267/rawfile/ba7d84022e93980a45d131c4d474a5bf2846425a/protocolSEDML.xml
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<?xml version='1.0' encoding='UTF-8'?>
    <listOfProtocols>
        <Protocol id="1A" 
                  nameX="Time" 
				  nameY="Extracellular sodium concentration" 
				  opbX="http://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00340" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_280787" 
				  fmaYsrc="http://purl.obolibrary.org/obo" 
				  fmaYsnk="http://purl.obolibrary.org/obo" 
				  sparqlX="protocol1AX" 
				  sparqlY="protocol1AY"/>
		<Protocol id="1B" 
                  nameX="Time" 
				  nameY="Portion of tissue fluid chloride concentration" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="http://identifiers.org/opb/OPB_00340" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsrc="http://purl.obolibrary.org/obo" 
				  fmaYsnk="http://purl.obolibrary.org/obo" 
				  sparqlX="protocol1BX" 
				  sparqlY="protocol1BY"/>
		<Protocol id="1C" 
                  nameX="Time" 
				  nameY="Portion of tissue fluid bicarbonate concentration" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00340" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17544" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsrc="http://purl.obolibrary.org/obo" 
				  fmaYsnk="http://purl.obolibrary.org/obo" 
				  sparqlX="protocol1CX" 
				  sparqlY="protocol1CY"/>
		<Protocol id="1D" 
                  nameX="Time" 
				  nameY="Bicarbonate flux" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17544" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_9673" 
				  sparqlX="protocol1DX" 
				  sparqlY="protocol1DY"/>
		<Protocol id="1E" 
                  nameX="Time" 
				  nameY="Chloride flux" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_9673" 
				  sparqlX="protocol1EX" 
				  sparqlY="protocol1EY"/>
		<Protocol id="1F" 
                  nameX="Time" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol1FX" 
				  sparqlY="protocol1FY"/>
		<Protocol id="1F2" 
                  nameX="Time" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280791"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol1FX2" 
				  sparqlY="protocol1FY2"/>
		<Protocol id="1G" 
                  nameX="Time" 
				  nameY="Bicarbonate influx" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17544" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol1GX" 
				  sparqlY="protocol1GY"/>
		<Protocol id="1H" 
                  nameX="Time" 
				  nameY="Chloride influx" 
				  opbX="https://identifiers.org/opb/OPB_01023" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  fmaX="http://purl.obolibrary.org/obo" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84669" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_9673" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol1HX" 
				  sparqlY="protocol1HY"/>
        <Protocol id="2A" 
                  nameX="External pH concentration" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_82715" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol2AX" 
				  sparqlY="protocol2AY"/>
		<Protocol id="2B" 
                  nameX="Extracellular hydrogen concentration" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_15378" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol2BX" 
				  sparqlY="protocol2BY"/>
        <Protocol id="3" 
                  nameX="Extracellular sodium concentration" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787" 
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol3X" 
				  sparqlY="protocol3Y"/>
        <Protocol id="4" 
                  nameX="Extracellular ammonium concentration" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_28938" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol4X" 
				  sparqlY="protocol4Y"/>
        <Protocol id="5" 
                  nameX="Internal pH concentration" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol5X" 
				  sparqlY="protocol5Y"/>
        <Protocol id="6A" 
                  nameX="Internal pH concentration" 
				  nameY="Sodium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol6AX" 
				  sparqlY="protocol6AY"/>
        <Protocol id="6B" 
                  nameX="Internal pH concentration" 
				  nameY="Hydrogen flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_15378" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol6BX" 
				  sparqlY="protocol6BY"/>
		<Protocol id="6C" 
                  nameX="Internal pH concentration" 
				  nameY="Ammonium flux" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_9641" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_28938" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_66836" 
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol6CX" 
				  sparqlY="protocol6CY"/>
		<Protocol id="10" 
                  nameX="Chloride concentration" 
				  nameY="Sodium influx" 
				  opbX="https://identifiers.org/opb/OPB_00340" 
				  opbY="https://identifiers.org/opb/OPB_00593" 
				  chebiX="http://purl.obolibrary.org/obo/CHEBI_17996" 
				  chebiY="http://purl.obolibrary.org/obo/CHEBI_29101" 
				  fmaX="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaXsrc="http://purl.obolibrary.org/obo" 
				  fmaXsnk="http://purl.obolibrary.org/obo" 
				  fmaY="http://purl.obolibrary.org/obo/FMA_84666" 
				  fmaYsrc="http://purl.obolibrary.org/obo/FMA_280787"
				  fmaYsnk="http://purl.obolibrary.org/obo/FMA_66836" 
				  sparqlX="protocol10X" 
				  sparqlY="protocol10Y"/>
    </listOfProtocols>