Location: semantic-annotation @ dbf7cc38fb86 / SEDML / 1H_weinstein_2000.rdf

Author:
Dewan Sarwar <dsar941@UoA.auckland.ac.nz>
Date:
2020-06-25 20:46:06+12:00
Desc:
replace 280787 with 74550 for FMA in mackenzie model
Permanent Source URI:
https://models.cellml.org/workspace/267/rawfile/dbf7cc38fb86216e94ad64f361160b8019104ecc/SEDML/1H_weinstein_2000.rdf

<rdf:RDF xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"
         xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
         xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
         xmlns:semsim="http://www.bhi.washington.edu/SemSim#"
         xmlns:dcterms="http://purl.org/dc/terms/">

    <rdf:Description rdf:about="protocol1H_weinstein_2000.sedml#AE1.Cl_e">
        <semsim:isComputationalComponentFor>
            <rdf:Description rdf:about="#property_3">
                <semsim:physicalPropertyOf>
                    <rdf:Description rdf:about="#entity_3">
                        <ro:part_of>
                            <rdf:Description rdf:about="#entity_4">
                                <ro:part_of>
                                    <rdf:Description rdf:about="#entity_2">
                                        <semsim:hasPhysicalDefinition
                                                rdf:resource="http://purl.obolibrary.org/obo/FMA_70982"/>
                                    </rdf:Description>
                                </ro:part_of>
                                <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_9673"/>
                            </rdf:Description>
                        </ro:part_of>
                        <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17996"/>
                    </rdf:Description>
                </semsim:physicalPropertyOf>
                <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340"/>
            </rdf:Description>
        </semsim:isComputationalComponentFor>
        <dcterms:description>concentration of chloride in the portion of tissue fluid in epithelial cell of collecting
            duct of renal tubule compartment
        </dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="protocol1H_weinstein_2000.sedml#AE1.Cl_i">
        <semsim:isComputationalComponentFor>
            <rdf:Description rdf:about="#property_2">
                <semsim:physicalPropertyOf>
                    <rdf:Description rdf:about="#entity_0">
                        <ro:part_of>
                            <rdf:Description rdf:about="#entity_1">
                                <ro:part_of rdf:resource="#entity_2"/>
                                <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/FMA_66836"/>
                            </rdf:Description>
                        </ro:part_of>
                        <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_17996"/>
                    </rdf:Description>
                </semsim:physicalPropertyOf>
                <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340"/>
            </rdf:Description>
        </semsim:isComputationalComponentFor>
        <dcterms:description>concentration of chloride in the portion of cytosol in epithelial cell of collecting duct
            of renal tubule compartment
        </dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="protocol1H_weinstein_2000.sedml#AE1.Jc_influx">
        <semsim:isComputationalComponentFor>
            <rdf:Description rdf:about="#property_4">
                <semsim:physicalPropertyOf>
                    <rdf:Description rdf:about="#process_0" dcterms:description="">
                        <semsim:hasMediatorParticipant>
                            <rdf:Description rdf:about="#mediator_0">
                                <semsim:hasPhysicalEntityReference>
                                    <rdf:Description rdf:about="#entity_5">
                                        <ro:part_of rdf:resource="#entity_2"/>
                                        <semsim:hasPhysicalDefinition
                                                rdf:resource="http://purl.obolibrary.org/obo/FMA_84669"/>
                                    </rdf:Description>
                                </semsim:hasPhysicalEntityReference>
                            </rdf:Description>
                        </semsim:hasMediatorParticipant>
                        <semsim:hasSinkParticipant>
                            <rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
                                <semsim:hasPhysicalEntityReference rdf:resource="#entity_0"/>
                            </rdf:Description>
                        </semsim:hasSinkParticipant>
                        <semsim:hasSourceParticipant>
                            <rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
                                <semsim:hasPhysicalEntityReference rdf:resource="#entity_3"/>
                            </rdf:Description>
                        </semsim:hasSourceParticipant>
                        <semsim:name>Cl- flow from tissue fluid to cytosol across basolateral membrane</semsim:name>
                    </rdf:Description>
                </semsim:physicalPropertyOf>
                <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593"/>
            </rdf:Description>
        </semsim:isComputationalComponentFor>
        <dcterms:description>flux of chloride from portion of tissue fluid in epithelial cell of collecting duct of
            renal tubule to portion of cytosol in epithelial cell of collecting duct of renal tubule compartment across
            basolateral plasma membrane
        </dcterms:description>
    </rdf:Description>
    <rdf:Description rdf:about="protocol1H_weinstein_2000.sedml#environment.time">
        <bqbiol:is rdf:resource="http://identifiers.org/opb/OPB_01023"/>
    </rdf:Description>
    <rdf:Description rdf:about="protocol1H_weinstein_2000.sedml#weinstein_2000_1H">
        <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_84669"/>
        <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_66836"/>
        <ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_9673"/>
        <ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/PR_P23562"/>
        <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_9673"/>
        <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_84669"/>
        <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836"/>
        <bqbiol:isTime rdf:resource="http://identifiers.org/opb/OPB_01023"/>
    </rdf:Description>
</rdf:RDF>