- Author:
- Soroush Safaei <ssaf006@aucklanduni.ac.nz>
- Date:
- 2017-03-07 13:53:18+13:00
- Desc:
- fix docs
- Permanent Source URI:
- https://models.cellml.org/workspace/297/rawfile/221e12c21ab4613d9f1bc0aabeee8547805a7b24/BG/BG-Boron.cellml
<?xml version='1.0'?>
<model name="BG_Boron" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="Units.cellml">
<units name="mol_per_m3" units_ref="mol_per_m3"/>
<units name="mol_per_m3_s" units_ref="mol_per_m3_s"/>
<units name="per_m" units_ref="per_m"/>
<units name="per_s" units_ref="per_s"/>
<units name="m_per_s" units_ref="m_per_s"/>
<units name="m3_per_mol" units_ref="m3_per_mol"/>
<units name="J_per_mol_K" units_ref="J_per_mol_K"/>
<units name="J_per_C" units_ref="J_per_C"/>
<units name="C_per_mol" units_ref="C_per_mol"/>
</import>
<import xlink:href="Parameters.cellml">
<component component_ref="Parameters" name="Parameters"/>
</import>
<component name="AcidBase">
<variable initial_value="0.000000000006" name="u_E" public_interface="out" units="J_per_C"/>
<variable name="q_CO2_o" public_interface="out" units="mol_per_m3"/>
<variable initial_value="0" name="q_CO2_i" public_interface="out" units="mol_per_m3"/>
<variable initial_value="0" name="q_HCO3_i" public_interface="out" units="mol_per_m3"/>
<variable initial_value="0" name="q_HCO3_o" public_interface="out" units="mol_per_m3"/>
<variable initial_value="40e-6" name="q_H_i" public_interface="out" units="mol_per_m3"/>
<variable initial_value="20e-6" name="q_H_o" public_interface="out" units="mol_per_m3"/>
<variable initial_value="0.00000926" name="K_CO2_i" public_interface="out" units="m3_per_mol"/>
<variable initial_value="0.108" name="K_HCO3_i" public_interface="out" units="m3_per_mol"/>
<variable initial_value="0.108" name="K_H_i" public_interface="out" units="m3_per_mol"/>
<variable initial_value="12000" name="rho" public_interface="out" units="per_m"/>
<variable initial_value="6e-5" name="K_Re_1" public_interface="out" units="m_per_s"/>
<variable initial_value="40500" name="K_Re_2" public_interface="out" units="mol_per_m3_s"/>
<!-- var K_Re_3: m_per_s {init: 5e-9, pub: out};-->
<variable initial_value="0" name="K_Re_3" public_interface="out" units="m_per_s"/>
<variable initial_value="0" name="K_Re_7" public_interface="out" units="m_per_s"/>
<variable name="v_Re_1" public_interface="out" units="mol_per_m3_s"/>
<variable name="v_Re_2" public_interface="out" units="mol_per_m3_s"/>
<variable name="v_Re_3" public_interface="out" units="mol_per_m3_s"/>
<variable name="v_Re_7" public_interface="out" units="mol_per_m3_s"/>
<variable name="pH_o" units="dimensionless"/>
<variable name="pH_i" units="dimensionless"/>
<variable name="t" public_interface="out" units="second"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>q_CO2_o</ci>
<piecewise>
<piece>
<cn cellml:units="dimensionless">1</cn>
<apply>
<lt/>
<ci>t</ci>
<cn cellml:units="second">600</cn>
</apply>
</piece>
<otherwise>
<cn cellml:units="dimensionless">0.0</cn>
</otherwise>
</piecewise>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_CO2_i</ci>
</apply>
<apply>
<minus/>
<ci>v_Re_1</ci>
<ci>v_Re_2</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_HCO3_o</ci>
</apply>
<apply>
<minus/>
<ci>v_Re_3</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_HCO3_i</ci>
</apply>
<apply>
<plus/>
<ci>v_Re_3</ci>
<ci>v_Re_2</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_H_o</ci>
</apply>
<apply>
<minus/>
<ci>v_Re_7</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_H_i</ci>
</apply>
<apply>
<plus/>
<ci>v_Re_7</ci>
<ci>v_Re_2</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>pH_o</ci>
<apply>
<minus/>
<apply>
<log/>
<apply>
<times/>
<cn cellml:units="dimensionless" type="e-notation">1<sep/>-3</cn>
<ci>q_H_o</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>pH_i</ci>
<apply>
<minus/>
<apply>
<log/>
<apply>
<times/>
<cn cellml:units="dimensionless" type="e-notation">1<sep/>-3</cn>
<ci>q_H_i</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_Re_1</ci>
<apply>
<times/>
<ci>K_Re_1</ci>
<ci>rho</ci>
<apply>
<minus/>
<ci>q_CO2_o</ci>
<ci>q_CO2_i</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_Re_2</ci>
<apply>
<times/>
<ci>K_Re_2</ci>
<apply>
<minus/>
<apply>
<times/>
<ci>K_CO2_i</ci>
<ci>q_CO2_i</ci>
</apply>
<apply>
<times/>
<ci>K_HCO3_i</ci>
<ci>q_HCO3_i</ci>
<ci>K_H_i</ci>
<ci>q_H_i</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_Re_3</ci>
<apply>
<times/>
<ci>K_Re_3</ci>
<ci>rho</ci>
<apply>
<minus/>
<ci>q_HCO3_o</ci>
<ci>q_HCO3_i</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_Re_7</ci>
<apply>
<times/>
<ci>K_Re_7</ci>
<ci>rho</ci>
<apply>
<minus/>
<ci>q_H_o</ci>
<ci>q_H_i</ci>
</apply>
</apply>
</apply>
</math>
</component>
</model>
