- Author:
- Soroush Safaei <ssaf006@aucklanduni.ac.nz>
- Date:
- 2017-08-19 23:08:50+12:00
- Desc:
- Auto stash before merge of "master" and "origin/master"
- Permanent Source URI:
- https://models.cellml.org/workspace/297/rawfile/608392dde916ecbee7adfeabd5c4913293ed79f1/BG/BG-Boron.cellml
<?xml version='1.0'?>
<model name="BG_Boron" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="Units.cellml">
<units name="mol_per_m3" units_ref="mol_per_m3"/>
<units name="mol_per_m3_s" units_ref="mol_per_m3_s"/>
<units name="per_m" units_ref="per_m"/>
<units name="per_s" units_ref="per_s"/>
<units name="m_per_s" units_ref="m_per_s"/>
<units name="m3_per_mol" units_ref="m3_per_mol"/>
<units name="J_per_mol_K" units_ref="J_per_mol_K"/>
<units name="J_per_C" units_ref="J_per_C"/>
<units name="C_per_mol" units_ref="C_per_mol"/>
</import>
<component name="AcidBase">
<variable name="t" public_interface="out" units="second"/>
<variable initial_value="-0.057" name="u_E" public_interface="out" units="J_per_C"/>
<variable initial_value="0.0256796" name="RTF" units="J_per_C"/>
<variable name="epsilon" units="dimensionless"/>
<variable name="q_CO2_o" public_interface="out" units="mol_per_m3"/>
<variable initial_value="0" name="q_CO2_i" public_interface="out" units="mol_per_m3"/>
<variable initial_value="0" name="q_HCO3_i" public_interface="out" units="mol_per_m3"/>
<variable initial_value="0" name="q_HCO3_o" public_interface="out" units="mol_per_m3"/>
<variable initial_value="3.981e-05" name="q_H_i" public_interface="out" units="mol_per_m3"/>
<variable initial_value="1.995e-5" name="q_H_o" public_interface="out" units="mol_per_m3"/>
<variable initial_value="3.981e-05" name="q_H_lim" public_interface="out" units="mol_per_m3"/>
<variable initial_value="0.1" name="K_CO2_o" public_interface="out" units="m3_per_mol"/>
<variable initial_value="0.1" name="K_CO2_i" public_interface="out" units="m3_per_mol"/>
<variable initial_value="10.0" name="K_HCO3_o" public_interface="out" units="m3_per_mol"/>
<variable initial_value="10.0" name="K_HCO3_i" public_interface="out" units="m3_per_mol"/>
<variable initial_value="10.0" name="K_H_o" public_interface="out" units="m3_per_mol"/>
<variable initial_value="10.0" name="K_H_i" public_interface="out" units="m3_per_mol"/>
<variable initial_value="3.65" name="k_Re_1" public_interface="out" units="mol_per_m3_s"/>
<variable initial_value="3.65" name="k_Re_2" public_interface="out" units="mol_per_m3_s"/>
<variable initial_value="0.48" name="k_Re_3" public_interface="out" units="per_s"/>
<variable initial_value="0" name="k_Re_4" public_interface="out" units="per_s"/>
<variable initial_value="4e-5" name="k_Re_5" public_interface="out" units="per_s"/>
<variable name="v_1" public_interface="out" units="mol_per_m3_s"/>
<variable name="v_2" public_interface="out" units="mol_per_m3_s"/>
<variable name="v_3" public_interface="out" units="mol_per_m3_s"/>
<variable name="v_4" public_interface="out" units="mol_per_m3_s"/>
<variable name="v_5" public_interface="out" units="mol_per_m3_s"/>
<variable name="pH_o" units="dimensionless"/>
<variable name="pH_i" units="dimensionless"/>
<variable name="pH_lim" units="dimensionless"/>
<variable initial_value="-26" name="beta" units="mol_per_m3"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>pH_o</ci>
<apply>
<minus/>
<apply>
<log/>
<apply>
<times/>
<cn cellml:units="m3_per_mol" type="e-notation">1<sep/>-3</cn>
<ci>q_H_o</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>pH_i</ci>
<apply>
<minus/>
<apply>
<log/>
<apply>
<times/>
<cn cellml:units="m3_per_mol" type="e-notation">1<sep/>-3</cn>
<ci>q_H_i</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>pH_lim</ci>
<apply>
<minus/>
<apply>
<log/>
<apply>
<times/>
<cn cellml:units="m3_per_mol" type="e-notation">1<sep/>-3</cn>
<ci>q_H_lim</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>epsilon</ci>
<apply>
<exp/>
<apply>
<divide/>
<apply>
<minus/>
<ci>u_E</ci>
</apply>
<ci>RTF</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>q_CO2_o</ci>
<piecewise>
<piece>
<cn cellml:units="mol_per_m3">0.0</cn>
<apply>
<lt/>
<ci>t</ci>
<cn cellml:units="second">100</cn>
</apply>
</piece>
<piece>
<cn cellml:units="mol_per_m3">1.1877</cn>
<apply>
<lt/>
<ci>t</ci>
<cn cellml:units="second">2800</cn>
</apply>
</piece>
<otherwise>
<cn cellml:units="mol_per_m3">0.0</cn>
</otherwise>
</piecewise>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_CO2_i</ci>
</apply>
<apply>
<plus/>
<apply>
<minus/>
<ci>v_2</ci>
</apply>
<ci>v_3</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_HCO3_o</ci>
</apply>
<apply>
<minus/>
<ci>v_1</ci>
<ci>v_5</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_HCO3_i</ci>
</apply>
<apply>
<plus/>
<ci>v_2</ci>
<ci>v_5</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_H_i</ci>
</apply>
<apply>
<times/>
<apply>
<divide/>
<apply>
<times/>
<apply>
<minus/>
<cn cellml:units="dimensionless">2.3</cn>
</apply>
<ci>q_H_i</ci>
</apply>
<ci>beta</ci>
</apply>
<apply>
<minus/>
<ci>v_2</ci>
<ci>v_4</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_1</ci>
<apply>
<times/>
<ci>k_Re_1</ci>
<apply>
<minus/>
<apply>
<times/>
<ci>K_CO2_o</ci>
<ci>q_CO2_o</ci>
</apply>
<apply>
<times/>
<ci>K_HCO3_o</ci>
<ci>q_HCO3_o</ci>
<ci>K_H_o</ci>
<ci>q_H_o</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_2</ci>
<apply>
<times/>
<ci>k_Re_2</ci>
<apply>
<minus/>
<apply>
<times/>
<ci>K_CO2_i</ci>
<ci>q_CO2_i</ci>
</apply>
<apply>
<times/>
<ci>K_HCO3_i</ci>
<ci>q_HCO3_i</ci>
<ci>K_H_i</ci>
<ci>q_H_i</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_3</ci>
<apply>
<times/>
<ci>k_Re_3</ci>
<apply>
<minus/>
<ci>q_CO2_o</ci>
<ci>q_CO2_i</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_4</ci>
<piecewise>
<piece>
<apply>
<times/>
<ci>k_Re_4</ci>
<apply>
<minus/>
<ci>q_H_i</ci>
<ci>q_H_lim</ci>
</apply>
</apply>
<apply>
<lt/>
<ci>pH_i</ci>
<ci>pH_lim</ci>
</apply>
</piece>
<otherwise>
<cn cellml:units="mol_per_m3_s">0.0</cn>
</otherwise>
</piecewise>
</apply>
<apply>
<eq/>
<ci>v_5</ci>
<apply>
<divide/>
<apply>
<times/>
<apply>
<divide/>
<apply>
<times/>
<ci>k_Re_5</ci>
<ci>u_E</ci>
</apply>
<ci>RTF</ci>
</apply>
<apply>
<minus/>
<ci>q_HCO3_o</ci>
<apply>
<times/>
<ci>q_HCO3_i</ci>
<ci>epsilon</ci>
</apply>
</apply>
</apply>
<apply>
<minus/>
<cn cellml:units="dimensionless">1</cn>
<ci>epsilon</ci>
</apply>
</apply>
</apply>
</math>
</component>
</model>
