Location: Principled Model Base @ 3f04efaa4258 / Template_Promoter_Inductive.cellml

Author:
Michael Cooling <mcoo001@UoA.auckland.ac.nz>
Date:
2016-04-11 11:42:23+12:00
Desc:
Initial Commit
Permanent Source URI:
https://models.cellml.org/workspace/2c3/rawfile/3f04efaa4258734f9fe9caada1095a4310ec580b/Template_Promoter_Inductive.cellml

<?xml version="1.0" encoding="utf-8"?>

<model name="Template_Promoter_Inductive" cmeta:id="Template_Promoter_Inductive"
    xmlns="http://www.cellml.org/cellml/1.1#"
    xmlns:cellml="http://www.cellml.org/cellml/1.1#"
    xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
    xmlns:xlink="http://www.w3.org/1999/xlink"
    >        
    
    <import xlink:href="Units_Cellular_Systems.cellml">
	<units name="nM_per_s" units_ref="nM_per_s" />
	<units name="femtoliter" units_ref="femtoliter" />
	<units name="PoPs" units_ref="PoPs" />
	<units name="nM" units_ref="nM" />
	<units name="nanos" units_ref="nanos" />
	<units name="per_femto" units_ref="per_femto" />
    </import>
    
    <import xlink:href="mohr_taylor_newell_2008_subset.cellml">
    	<component name="codata_2006_physicochemical" component_ref="codata_2006_physicochemical_subset" />
    	<units name="per_mole" units_ref="per_mole" />
    </import>
  
   <component name="Template_Promoter_Inductive">
       <variable name="JRNA" units="nM_per_s" public_interface="out"/>
            <variable name="localVolume" units="femtoliter" public_interface="in"/>
            <variable name="avogadrosConstant" units="per_mole" public_interface="in"/>
            <variable name="k" units="PoPs" public_interface="in"/>
            <variable name="tFactor" units="nM" public_interface="in"/>
            <variable name="n" units="dimensionless" public_interface="in"/>
            <variable name="Km" units="nM" public_interface="in"/>
            <math xmlns="http://www.w3.org/1998/Math/MathML">
               <apply>
                  <eq/>
                  <ci>JRNA</ci>
                  <apply>
                     <divide/>
                     <apply>
                        <times/>
                        <apply>
                           <divide/>
                           <apply>
                              <times/>
                              <ci>k</ci>
                              <apply>
                              	<power/>
                                  <ci>tFactor</ci>
                                  <ci>n</ci>
                              </apply>
                           </apply>
                           <apply>
                              <plus/>
                              <apply>
                              	<power/>
                                   <ci>Km</ci>
                                   <ci>n</ci>
                              </apply>
                              <apply>
                                <power/>
                                   <ci>tFactor</ci>
                                   <ci>n</ci>
                              </apply>
                           </apply>
                        </apply>
                        <cn type="e-notation" cellml:units="nanos">1.0<sep/>9</cn>
                     </apply>
                     <apply>
                        <times/>
                        <ci>localVolume</ci>
                        <cn type="e-notation" cellml:units="per_femto">1.0<sep/>-15</cn>
                        <ci>avogadrosConstant</ci>
                     </apply>
                  </apply>
               </apply>
      	   </math>
   </component>
   
   <connection>
   	 <map_components component_1="Template_Promoter_Inductive" component_2="codata_2006_physicochemical"/>
   	 <map_variables variable_1="avogadrosConstant" variable_2="Avogadro_constant"/>
   </connection>  
   
</model>