Location: Incorporation of sarcolemmal calcium transporters into the Shorten et al. (2007) model of skeletal muscle @ 15e891636d83 / Fig06.py

Author:

David Nickerson <david.nickerson@gmail.com>

Date:

2020-08-25 11:25:22+12:00

Desc:

adding python script to run simulations required for Fig 6.

Permanent Source URI:

https://models.cellml.org/workspace/5c6/rawfile/15e891636d833c916209a30d7e5246c4206d000b/Fig06.py

# To reproduce the data needed for Figure 6 in associated Physiome paper,
# execute this script in the Python console in OpenCOR. This can be done
# with the following commands at the prompt in the OpenCOR Python console:
#
#     In [1]: cd path/to/folder_this_file_is_in
#     In [2]: %run Fig06.py
#

import opencor as opencor

simulation = opencor.open_simulation("Fig06.sedml")

# reset everything in case we are running interactively and have existing results
simulation.reset(True)

# clear the results
simulation.clear_results()

# run once to get to a steady starting point
simulation.run()
simulation.clear_results()

# and run the steady-state simulation
simulation.run()