Location: Generic cat bladder scaffold @ a52a881d5ec1 / Mesh-settings.json

Author:
Zohreh Ekhlasi <zekh167@aucklanduni.ac.nz>
Date:
2021-05-25 12:06:50+12:00
Desc:
modified Mess-settings file
Permanent Source URI:
https://models.cellml.org/workspace/618/rawfile/a52a881d5ec1a07c5d6559ccfab5f682c00617e1/Mesh-settings.json

{
    "generator_settings": {
        "deleteElementRanges": "",
        "displayAxes": false,
        "displayElementAxes": false,
        "displayElementNumbers": false,
        "displayLines": true,
        "displayLinesExterior": false,
        "displayMarkerPoints": true,
        "displayModelRadius": false,
        "displayNodeDerivativeLabels": [
            "D1",
            "D2",
            "D3"
        ],
        "displayNodeDerivatives": 0,
        "displayNodeNumbers": false,
        "displayNodePoints": true,
        "displaySurfaces": true,
        "displaySurfacesExterior": true,
        "displaySurfacesTranslucent": true,
        "displaySurfacesWireframe": false,
        "scaffoldPackage": {
            "_ScaffoldPackage": true,
            "rotation": [
                0.0,
                0.0,
                0.0
            ],
            "scaffoldSettings": {
                "Central path LUT": {
                    "_ScaffoldPackage": true,
                    "meshEdits": "EX Version: 2\n Group name: meshEdits\n!#nodeset nodes\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n y. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n z. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\nNode: 1\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  0.000000000000000e+00  0.000000000000000e+00  5.000000000000000e-01  0.000000000000000e+00\n  0.000000000000000e+00  1.500000000000000e+01  0.000000000000000e+00 -5.000000000000000e-01\nNode: 2\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  0.000000000000000e+00  0.000000000000000e+00  5.000000000000000e-01  0.000000000000000e+00\n  1.500000000000000e+01  1.500000000000000e+01  0.000000000000000e+00 -5.000000000000000e-01\nNode: 3\n  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00  0.000000000000000e+00\n  0.000000000000000e+00  0.000000000000000e+00  5.000000000000000e-01  0.000000000000000e+00\n  3.000000000000000e+01  1.500001441866876e+01  0.000000000000000e+00 -5.000000000000000e-01\nNode: 4\n  0.000000000000000e+00  6.405284819962884e-02  0.000000000000000e+00  0.000000000000000e+00\n  0.000000000000000e+00  4.927142169202219e-02  5.000000000000000e-01  0.000000000000000e+00\n  4.500000000000000e+01  1.522855081258555e+01  0.000000000000000e+00 -5.000000000000000e-01\nNode: 5\n  1.300000000000000e-01 -6.643010210642956e-01  0.000000000000000e+00  0.000000000000000e+00\n  1.000000000000000e-01 -8.758980098711661e-01  5.000000000000000e-01  0.000000000000000e+00\n  6.045000000000000e+01  1.551126522806504e+01  0.000000000000000e+00 -5.000000000000000e-01\nNode: 6\n -1.332884790703427e+00 -8.009193556449552e-01  0.000000000000000e+00  0.000000000000000e+00\n -1.756586725453194e+00 -6.686299397581659e-01  5.000000000000000e-01  0.000000000000000e+00\n  7.590088499188923e+01  1.644639026730136e+01  0.000000000000000e+00 -5.000000000000000e-01\nNode: 7\n -1.388265571616525e+00 -3.318106073399339e-01  0.000000000000000e+00  0.000000000000000e+00\n -1.099533446688139e+00  1.843878182594398e+00  5.000000000000000e-01  0.000000000000000e+00\n  9.318710456069307e+01  1.694399451988689e+01  0.000000000000000e+00 -5.000000000000000e-01\nNode: 8\n -1.985136608663694e+00 -5.024534851277551e-01  0.000000000000000e+00  0.000000000000000e+00\n  1.878834322894141e+00  5.250559448834048e+00  5.000000000000000e-01  0.000000000000000e+00\n  1.096571717779120e+02  1.655168162702987e+01  0.000000000000000e+00 -5.000000000000000e-01\nNode: 9\n -2.374471735240221e+00 -2.734975876982477e-01  0.000000000000000e+00  0.000000000000000e+00\n  9.436649048551844e+00  9.767954593929170e+00  5.000000000000000e-01  0.000000000000000e+00\n  1.259001801221737e+02  1.577747155630638e+01  0.000000000000000e+00 -5.000000000000000e-01\n",
                    "rotation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "scaffoldSettings": {
                        "Coordinate dimensions": 3,
                        "D2 derivatives": true,
                        "D3 derivatives": false,
                        "Length": 1.0,
                        "Number of elements": 8
                    },
                    "scaffoldTypeName": "1D Path 1",
                    "scale": [
                        1.0,
                        1.0,
                        1.0
                    ],
                    "translation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "userAnnotationGroups": [
                        {
                            "_AnnotationGroup": true,
                            "dimension": 1,
                            "identifierRanges": "1-4",
                            "name": "urinary bladder",
                            "ontId": "UBERON:0001255"
                        },
                        {
                            "_AnnotationGroup": true,
                            "dimension": 1,
                            "identifierRanges": "5-8",
                            "name": "urethra",
                            "ontId": "UBERON:0000057"
                        }
                    ]
                },
                "Include ureter": false,
                "Include urethra": true,
                "Major diameter": 30.0,
                "Minor diameter": 25.0,
                "Neck angle degrees": 45,
                "Neck diameter 1": 5.0,
                "Neck diameter 2": 4.0,
                "Number of elements along bladder": 12,
                "Number of elements along urethra": 8,
                "Number of elements around": 12,
                "Number of elements through wall": 1,
                "Number of elements ureter radial": 2,
                "Refine": false,
                "Refine number of elements along": 4,
                "Refine number of elements around": 4,
                "Refine number of elements through wall": 1,
                "Ureter": {
                    "_ScaffoldPackage": true,
                    "rotation": [
                        0.0,
                        0.0,
                        0.0
                    ],
                    "scaffoldSettings": {
                        "Number of elements across common": 2,
                        "Number of elements along": 1,
                        "Number of elements around ostium": 8,
                        "Number of elements through wall": 1,
                        "Number of vessels": 1,
                        "Ostium diameter": 2.2,
                        "Ostium inter-vessel distance": 0.8,
                        "Ostium inter-vessel height": 0.0,
                        "Ostium length": 0.5,
                        "Ostium wall thickness": 0.5,
                        "Outlet": false,
                        "Refine": false,
                        "Refine number of elements along": 4,
                        "Refine number of elements around": 4,
                        "Refine number of elements through wall": 1,
                        "Unit scale": 1.0,
                        "Use cross derivatives": false,
                        "Use linear through ostium wall": true,
                        "Use linear through vessel wall": true,
                        "Vessel angle 1 degrees": 0.0,
                        "Vessel angle 1 spread degrees": 0.0,
                        "Vessel angle 2 degrees": 0.0,
                        "Vessel end length factor": 2.0,
                        "Vessel inner diameter": 0.8,
                        "Vessel wall thickness": 0.25
                    },
                    "scaffoldTypeName": "3D Ostium 1",
                    "scale": [
                        1.0,
                        1.0,
                        1.0
                    ],
                    "translation": [
                        0.0,
                        0.0,
                        0.0
                    ]
                },
                "Ureter position around": 0.67,
                "Ureter position down": 0.83,
                "Urethra diameter 1": 1.5,
                "Urethra diameter 2": 1.0,
                "Urethra wall thickness": 0.5,
                "Use cross derivatives": false,
                "Use linear through wall": true,
                "Wall thickness": 0.5
            },
            "scaffoldTypeName": "3D Bladder with Urethra 1",
            "scale": [
                1.0,
                1.0,
                1.0
            ],
            "translation": [
                0.0,
                0.0,
                0.0
            ]
        }
    },
    "segmentation_data_settings": {
        "displayDataContours": false,
        "displayDataMarkerNames": false,
        "displayDataMarkerPoints": false,
        "displayDataPoints": false,
        "displayDataRadius": false
    }
}