Location: Hodgkin & Huxley (1952) model @ a617f7cad6bf / BG / default_values_BG.cellml

Author:
WeiweiAi <wai484@aucklanduni.ac.nz>
Date:
2022-02-14 15:36:25+13:00
Desc:
correct leakage equations; adjust the cost function of gate fiitting process
Permanent Source URI:
https://models.cellml.org/workspace/64f/rawfile/a617f7cad6bf75496162c76e248d9e1644be7535/BG/default_values_BG.cellml

<?xml version='1.0' encoding='UTF-8'?>
<model name="default_values_BG" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
    <import xlink:href="../cellLib/BG/units_BG.cellml">
        <units name="per_fmol" units_ref="per_fmol"/>
        <units name="fmol" units_ref="fmol"/>
        <units name="fmol_per_sec" units_ref="fmol_per_sec"/>
        <units name="fF" units_ref="fF"/>
        <units name="fS" units_ref="fS"/>
        <units name="fC" units_ref="fC"/>
    </import>
    <component name="model_para">
        <variable initial_value="279.45" name="T" public_interface="out" units="kelvin"/>
        <variable initial_value="0.3e9" name="C_m" public_interface="out" units="fF"/>
        <variable initial_value="0.09e12" name="g_leak" public_interface="out" units="fS"/>
        <variable initial_value="-54.387e-3" name="V_leak" public_interface="out" units="volt"/>
        <!--shift-->
        <variable initial_value="8.46373e-09" name="K_i_Na" public_interface="out" units="per_fmol"/>
        <variable initial_value="4.14332e-07" name="K_e_Na" public_interface="out" units="per_fmol"/>
        <variable initial_value="219.196" name="K_S00" public_interface="out" units="per_fmol"/>
        <variable initial_value="0.906681" name="K_S10" public_interface="out" units="per_fmol"/>
        <variable initial_value="0.0112512" name="K_S20" public_interface="out" units="per_fmol"/>
        <variable initial_value="0.000418853" name="K_S30" public_interface="out" units="per_fmol"/>
        <variable initial_value="1.48536e+06" name="K_S01" public_interface="out" units="per_fmol"/>
        <variable initial_value="6144.04" name="K_S11" public_interface="out" units="per_fmol"/>
        <variable initial_value="76.2425" name="K_S21" public_interface="out" units="per_fmol"/>
        <variable initial_value="2.83832" name="K_S31" public_interface="out" units="per_fmol"/>
        <variable initial_value="0.00901049" name="kappa_Na" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="49.0853" name="kappa_m10" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="7911.14" name="kappa_m20" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="318762" name="kappa_m30" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="0.00724356" name="kappa_m11" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="1.16745" name="kappa_m21" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="47.0399" name="kappa_m31" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="0.000351356" name="kappa_h0" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="0.0849427" name="kappa_h1" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="6.84516" name="kappa_h2" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="183.874" name="kappa_h3" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="0.485996" name="z_m_f" public_interface="out" units="dimensionless"/>
        <variable initial_value="-1.53779" name="z_m_r" public_interface="out" units="dimensionless"/>
        <variable initial_value="-2.02077" name="z_h_f" public_interface="out" units="dimensionless"/>
        <variable initial_value="0.490189" name="z_h_r" public_interface="out" units="dimensionless"/>
        <variable initial_value="1" name="z_Na" public_interface="out" units="dimensionless"/>
        <variable initial_value="8.65233e-09" name="K_i_K" public_interface="out" units="per_fmol"/>
        <variable initial_value="4.23564e-07" name="K_e_K" public_interface="out" units="per_fmol"/>
        <variable initial_value="15942.3" name="K_S0" public_interface="out" units="per_fmol"/>
        <variable initial_value="180.638" name="K_S1" public_interface="out" units="per_fmol"/>
        <variable initial_value="5.45801" name="K_S2" public_interface="out" units="per_fmol"/>
        <variable initial_value="0.371059" name="K_S3" public_interface="out" units="per_fmol"/>
        <variable initial_value="0.0672698" name="K_S4" public_interface="out" units="per_fmol"/>
        <variable initial_value="0.00941653" name="kappa_K" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="0.139421" name="kappa_n1" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="9.22855" name="kappa_n2" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="203.618" name="kappa_n3" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="1497.54" name="kappa_n4" public_interface="out" units="fmol_per_sec"/>
        <variable initial_value="0.592187" name="z_n_f" public_interface="out" units="dimensionless"/>
        <variable initial_value="-0.428927" name="z_n_r" public_interface="out" units="dimensionless"/>
        <variable initial_value="1" name="z_K" public_interface="out" units="dimensionless"/>
    </component>
    <component name="initials">
        <variable initial_value="-13039" name="q_m_init" public_interface="out" units="fC"/>
        <variable initial_value="380" name="q_i_Na_init" public_interface="out" units="fmol"/>
        <variable initial_value="725.48" name="q_e_Na_init" public_interface="out" units="fmol"/>
        <variable initial_value="0.00012033" name="q_S00_init" public_interface="out" units="fmol"/>
        <variable initial_value="4.0111e-05" name="q_S10_init" public_interface="out" units="fmol"/>
        <variable initial_value="4.4568e-06" name="q_S20_init" public_interface="out" units="fmol"/>
        <variable initial_value="1.6507e-07" name="q_S30_init" public_interface="out" units="fmol"/>
        <variable initial_value="1.337e-05" name="q_S01_init" public_interface="out" units="fmol"/>
        <variable initial_value="4.4568e-06" name="q_S11_init" public_interface="out" units="fmol"/>
        <variable initial_value="4.952e-07" name="q_S21_init" public_interface="out" units="fmol"/>
        <variable initial_value="1.8341e-08" name="q_S31_init" public_interface="out" units="fmol"/>
        <variable initial_value="5510" name="q_i_K_init" public_interface="out" units="fmol"/>
        <variable initial_value="27.9828" name="q_e_K_init" public_interface="out" units="fmol"/>
        <variable initial_value="4.5648e-06" name="q_S0_init" public_interface="out" units="fmol"/>
        <variable initial_value="1.1412e-06" name="q_S1_init" public_interface="out" units="fmol"/>
        <variable initial_value="2.2824e-06" name="q_S2_init" public_interface="out" units="fmol"/>
        <variable initial_value="5.706e-07" name="q_S3_init" public_interface="out" units="fmol"/>
        <variable initial_value="2.853e-07" name="q_S4_init" public_interface="out" units="fmol"/>
    </component>
</model>