- Author:
- WeiweiAi <wai484@aucklanduni.ac.nz>
- Date:
- 2021-08-10 15:00:21+12:00
- Desc:
- Add activation_function.cell, gating_experiment.cell and gating_experiment.sedml to simulate activation function and tau as function of V;
Modify and add more plot scripts and figures for Physiome articles
- Permanent Source URI:
- https://models.cellml.org/workspace/64f/rawfile/d9231655dc622ff60e69257b731e809923e8c02c/doc/experiments.rst
Experiments
---------------------
Following best practices, this model separates the mathematics from the parameterisation of the model. The mathematical model is imported into a specific parameterised instance in order to perform numerical simulations.
The parameterisation would include defining the stimulus protocol to be applied.
This workspace has three sets of experiment:
1. `Periodic stimulation <../experiments/periodic-stimulus.cellml/view>`_
2. `Voltage clamp experiment <../experiments/voltage_clamp_experiment.cellml/view>`_
3. `Action potential propagation along 1D cable model <../experiments/AP_propagation_experiment.cellml/view>`_
Simulation settings
-------------------
Simulation settings are encoded in SED-ML_ documents for experiment execution.
The python scripts to run simulation and reproduce the figures in the original paper are also included.
.. _SED-ML: http://sed-ml.org/
