- Author:
- Zohreh Ekhlasi <zekh167@aucklanduni.ac.nz>
- Date:
- 2022-09-07 15:36:21+12:00
- Desc:
- Added updated files.
- Permanent Source URI:
- https://models.cellml.org/workspace/6a7/rawfile/5aecc505d537d03a6dcae7029949a002964f394b/OrganScaffold-settings.json
{
"scaffold_settings": {
"deleteElementRanges": "",
"displayAxes": false,
"displayElementAxes": false,
"displayElementNumbers": false,
"displayLines": true,
"displayLinesExterior": false,
"displayMarkerPoints": false,
"displayModelRadius": false,
"displayNodeDerivativeLabels": [
"D1",
"D2",
"D3"
],
"displayNodeDerivatives": 0,
"displayNodeNumbers": false,
"displayNodePoints": false,
"displaySurfaces": true,
"displaySurfacesExterior": true,
"displaySurfacesTranslucent": true,
"displaySurfacesWireframe": false,
"modelCoordinatesField": "coordinates",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Base parameter set": "Rat 1",
"Central path": {
"_ScaffoldPackage": true,
"meshEdits": "EX Version: 3\nRegion: /\n!#nodeset nodes\nDefine node template: node1\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\n y. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\n z. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\nNode template: node1\nNode: 1\n 0.000000000000000e+00 0.000000000000000e+00 1.900000000000000e+00 -2.000000000000000e-01 0.000000000000000e+00 -0.000000000000000e+00\n 2.900000000000000e+00 5.000000000000000e-01 0.000000000000000e+00 0.000000000000000e+00 1.300000000000000e+00 2.000000000000000e-01\n -5.400000000000000e+00 1.700000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 -4.000000000000000e-01 1.300000000000000e+00\nNode: 2\n 0.000000000000000e+00 0.000000000000000e+00 1.800000000000000e+00 0.000000000000000e+00 -0.000000000000000e+00 -0.000000000000000e+00\n 2.700000000000000e+00 -9.000000000000000e-01 0.000000000000000e+00 0.000000000000000e+00 1.400000000000000e+00 0.000000000000000e+00\n -3.500000000000000e+00 2.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 6.000000000000000e-01 8.000000000000000e-01\nNode: 3\n 0.000000000000000e+00 0.000000000000000e+00 2.000000000000000e+00 5.000000000000000e-01 -0.000000000000000e+00 0.000000000000000e+00\n 1.100000000000000e+00 -1.400000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.300000000000000e+00 1.000000000000000e-01\n -1.800000000000000e+00 1.700000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.100000000000000e+00 2.000000000000000e-01\nNode: 4\n 0.000000000000000e+00 0.000000000000000e+00 2.700000000000000e+00 3.000000000000000e-01 -0.000000000000000e+00 0.000000000000000e+00\n -1.000000000000000e-01 -1.100000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.500000000000000e+00 2.000000000000000e-01\n -2.000000000000000e-01 1.500000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.100000000000000e+00 -2.000000000000000e-01\nNode: 5\n 0.000000000000000e+00 0.000000000000000e+00 2.700000000000000e+00 -2.000000000000000e-01 -0.000000000000000e+00 0.000000000000000e+00\n -1.100000000000000e+00 -7.000000000000000e-01 0.000000000000000e+00 0.000000000000000e+00 1.800000000000000e+00 1.000000000000000e-01\n 1.200000000000000e+00 1.600000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 8.000000000000000e-01 -1.000000000000000e-01\nNode: 6\n 0.000000000000000e+00 0.000000000000000e+00 2.200000000000000e+00 -1.000000000000000e-01 -0.000000000000000e+00 0.000000000000000e+00\n -1.500000000000000e+00 -1.100000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.700000000000000e+00 -4.000000000000000e-01\n 3.000000000000000e+00 1.900000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.000000000000000e+00 4.000000000000000e-01\nNode: 7\n 0.000000000000000e+00 0.000000000000000e+00 2.700000000000000e+00 1.100000000000000e+00 -0.000000000000000e+00 0.000000000000000e+00\n -3.300000000000000e+00 -2.400000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 9.000000000000000e-01 -1.200000000000000e+00\n 4.600000000000000e+00 1.300000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.700000000000000e+00 1.000000000000000e+00\nGroup name: meshEdits\n!#nodeset nodes\nNode group:\n1..7\n",
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Coordinate dimensions": 3,
"D2 derivatives": true,
"D3 derivatives": true,
"Length": 1.0,
"Number of elements": 6
},
"scaffoldTypeName": "1D Path 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
],
"userAnnotationGroups": [
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "1-2",
"name": "medulla oblongata",
"ontId": "UBERON:0001896"
},
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "3-4",
"name": "pons",
"ontId": "UBERON:0000988"
},
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "5-6",
"name": "midbrain",
"ontId": "UBERON:0001891"
}
]
},
"Number of elements across major": 6,
"Number of elements across minor": 6,
"Number of elements along": 8,
"Refine": false,
"Refine number of elements across major and minor": 1,
"Refine number of elements along": 1,
"Use cross derivatives": false
},
"scaffoldTypeName": "3D Brainstem 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {
"displayDataContours": true,
"displayDataMarkerNames": true,
"displayDataMarkerPoints": true,
"displayDataPoints": false,
"displayDataRadius": false
}
}
