- Author:
- aram148 <42922407+aram148@users.noreply.github.com>
- Date:
- 2022-07-22 15:47:05+12:00
- Desc:
- Added documentation for VSM model
- Permanent Source URI:
- https://models.cellml.org/workspace/6b0/rawfile/a8a92308e217ac5626809237dd90a31240b22834/Airway_FTU/cellml2_version/experiments/hai.cellml
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<units name="nanometre">
<unit prefix="nano" units="metre"/>
</units>
<units name="first_order_rate_constant">
<unit exponent="-1" units="second"/>
</units>
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<variable name="time" units="second" interface="public"/>
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<variable name="AM" units="dimensionless" interface="public"/>
<variable name="Mp" units="dimensionless" interface="public"/>
<variable name="k1" units="first_order_rate_constant" interface="public"/>
<variable name="k2" units="first_order_rate_constant" interface="public"/>
<variable name="k7" units="first_order_rate_constant" interface="public"/>
<variable name="time" units="second" interface="public"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
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<eq/>
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<diff/>
<bvar>
<ci>time</ci>
</bvar>
<ci>M</ci>
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<apply>
<plus/>
<apply>
<times/>
<apply>
<minus/>
<ci>k1</ci>
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<ci>M</ci>
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<times/>
<ci>k2</ci>
<ci>Mp</ci>
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<apply>
<times/>
<ci>k7</ci>
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</math>
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<variable name="k3" units="first_order_rate_constant" interface="public"/>
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<variable name="time" units="second" interface="public"/>
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<times/>
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<times/>
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<ci>M</ci>
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<apply>
<times/>
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<plus/>
<ci>k2</ci>
<ci>k3</ci>
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</math>
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<variable name="Mp" units="dimensionless" interface="public"/>
<variable name="AM" units="dimensionless" interface="public"/>
<variable name="k5" units="first_order_rate_constant" interface="public"/>
<variable name="k6" units="first_order_rate_constant" interface="public"/>
<variable name="k3" units="first_order_rate_constant" interface="public"/>
<variable name="k4" units="first_order_rate_constant" interface="public"/>
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<ci>k6</ci>
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<times/>
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<variable name="k6" units="first_order_rate_constant" interface="public"/>
<variable name="k7" units="first_order_rate_constant" interface="public"/>
<variable name="time" units="second" interface="public"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
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<eq/>
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<diff/>
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<ci>time</ci>
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<minus/>
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<times/>
<ci>k5</ci>
<ci>AMp</ci>
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<apply>
<times/>
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<plus/>
<ci>k6</ci>
<ci>k7</ci>
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<variable name="Mp" units="dimensionless" interface="public"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>phosphorylation</ci>
<apply>
<plus/>
<ci>AMp</ci>
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</apply>
</apply>
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</component>
<component name="stress" id="stress">
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<variable name="AM" units="dimensionless" interface="public"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
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<eq/>
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<plus/>
<ci>AMp</ci>
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</math>
</component>
<component name="model_parameters">
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<variable initial_value="0.5" name="k5" units="first_order_rate_constant" interface="public"/>
<variable name="k6" units="first_order_rate_constant" interface="public"/>
<variable initial_value="0.4" name="k3" units="first_order_rate_constant" interface="public"/>
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<variable initial_value="0.01" name="k7" units="first_order_rate_constant" interface="public"/>
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<eq/>
<ci>k1</ci>
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<piece>
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<and/>
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<geq/>
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<lt/>
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<eq/>
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<connection component_1="Mp" component_2="AMp">
<map_variables variable_1="Mp" variable_2="Mp"/>
<map_variables variable_1="AMp" variable_2="AMp"/>
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<connection component_1="phosphorylation" component_2="AMp">
<map_variables variable_1="AMp" variable_2="AMp"/>
</connection>
<connection component_1="phosphorylation" component_2="Mp">
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</connection>
<connection component_1="stress" component_2="AMp">
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</connection>
<connection component_1="stress" component_2="AM">
<map_variables variable_1="AM" variable_2="AM"/>
</connection>
</model>
