Location: BG_B1AR @ 826e541b9830 / BG_beta1AR.cellml

Author:
Shelley Fong <s.fong@auckland.ac.nz>
Date:
2021-08-25 16:57:25+12:00
Desc:
Adding scheme4 (sig) submodule
Permanent Source URI:
https://models.cellml.org/workspace/6ba/rawfile/826e541b9830a1629f6a3c78be33a504fdb00b4b/BG_beta1AR.cellml

<?xml version='1.0' encoding='UTF-8'?>
<!-- BG model of beta1 adrenergic receptor activation + Gs ctivation, based on saucerman2003, v1
 1jul21 initialising file 
19 Jul beta1AR only: no Gactivation (see GPCR_sneyd)-->
<model name="BG_beta1AR" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
    <import xlink:href="units_and_constants/units_BG.cellml">
        <units name="per_sec" units_ref="per_sec"/>
        <units name="J_per_K_per_mol" units_ref="J_per_K_per_mol"/>
        <units name="C_per_mol" units_ref="C_per_mol"/>
        <units name="fmol" units_ref="fmol"/>
        <units name="fmol_per_L" units_ref="fmol_per_L"/>
        <units name="fmol_per_L_per_sec" units_ref="fmol_per_L_per_sec"/>
        <units name="per_sec_per_fmol_per_L" units_ref="per_sec_per_fmol_per_L"/>
        <units name="per_fmol" units_ref="per_fmol"/>
        <units name="fmol_per_sec" units_ref="fmol_per_sec"/>
        <units name="J_per_mol" units_ref="J_per_mol"/>
        <units name="mM" units_ref="mM"/>
        <units name="uM" units_ref="uM"/>
        <units name="mM_per_sec" units_ref="mM_per_sec"/>
        <units name="uM_per_sec" units_ref="uM_per_sec"/>
        <units name="pL" units_ref="pL"/>
        <units name="m_to_u" units_ref="m_to_u"/>
    </import>
    <component name="environment">
        <variable name="time" public_interface="out" units="second"/>
        <variable initial_value="0" name="q_LR_global" units="fmol"/>
    </component>
    <import xlink:href="units_and_constants/constants_BG.cellml">
        <component component_ref="constants" name="constants"/>
    </import>
    <component name="B1AR">
        <variable name="time" public_interface="in" units="second"/>
        <!-- Physical parameters-->
        <variable name="R" public_interface="in" units="J_per_K_per_mol"/>
        <variable name="T" public_interface="in" units="kelvin"/>
        <!-- Bond graph parameters, found using pinv of kinetic parameters-->
        <variable initial_value="23956.9" name="kappa_sig1" units="fmol_per_sec"/>
        <variable initial_value="18.7535" name="kappa_sig2" units="fmol_per_sec"/>
        <variable initial_value="65.8018" name="kappa_sig3" units="fmol_per_sec"/>
        <variable initial_value="65.8018" name="kappa_sig4" units="fmol_per_sec"/>
        <variable initial_value="6.00812e-05" name="kappa_B11" units="fmol_per_sec"/>
        <variable initial_value="27309.6" name="kappa_B12" units="fmol_per_sec"/>
        <variable initial_value="6.00812e-05" name="kappa_B21" units="fmol_per_sec"/>
        <variable initial_value="27309.6" name="kappa_B22" units="fmol_per_sec"/>
        <variable initial_value="0.0240723" name="kappa_P1" units="fmol_per_sec"/>
        <variable initial_value="0.00231579" name="kappa_P2" units="fmol_per_sec"/>
        <variable initial_value="1.12532" name="K_L" units="per_fmol"/>
        <variable initial_value="19.5713" name="K_R" units="per_fmol"/>
        <variable initial_value="0.00180233" name="K_G" units="per_fmol"/>
        <variable initial_value="441.777" name="K_LR" units="per_fmol"/>
        <variable initial_value="40.0429" name="K_RG" units="per_fmol"/>
        <variable initial_value="441.777" name="K_LRG" units="per_fmol"/>
        <variable initial_value="5.30133e-10" name="K_B1d" units="per_fmol"/>
        <variable initial_value="5.8369e-05" name="K_BARK" units="per_fmol"/>
        <variable initial_value="1.06445" name="K_LR_BARK" units="per_fmol"/>
        <variable initial_value="1.06445" name="K_LRG_BARK" units="per_fmol"/>
        <variable initial_value="0.0336751" name="K_B1p" units="per_fmol"/>
        <variable initial_value="0.0336751" name="K_B1tot" units="per_fmol"/>
        <variable initial_value="0.0390101" name="K_PKACI" units="per_fmol"/>
        <variable initial_value="1.2076e-06" name="K_PKACI_B1p" units="per_fmol"/>
        <!-- States (and initial conditions)-->
        <!-- 8jul21 original kinetic concs + equal division of enzyme states-->
        <variable initial_value="1e-2" name="q_L" public_interface="out" units="fmol"/>
        <variable initial_value="1e-16" name="q_R" public_interface="out" units="fmol"/>
        <variable initial_value="1e-16" name="q_G" public_interface="out" units="fmol"/>
        <variable initial_value="1.697e-06" name="q_LR" public_interface="out" units="fmol"/>
        <variable initial_value="1e-16" name="q_RG" public_interface="out" units="fmol"/>
        <variable initial_value="0.00010466" name="q_LRG" public_interface="out" units="fmol"/>
        <variable initial_value="1.697e-06" name="q_LR_BARK" public_interface="out" units="fmol"/>
        <variable initial_value="0.00010466" name="q_LRG_BARK" public_interface="out" units="fmol"/>
        <variable initial_value="0" name="q_B1d" public_interface="out" units="fmol"/>
        <variable initial_value="2.1926e-05" name="q_B1p" public_interface="out" units="fmol"/>
        <variable initial_value="2.1926e-05" name="q_PKACI_B1p" public_interface="out" units="fmol"/>
        <variable initial_value="0.0004579" name="q_B1tot" public_interface="out" units="fmol"/>
        <variable initial_value="0.00221209" name="q_PKACI" public_interface="out" units="fmol"/>
        <variable initial_value="0.0228" name="q_BARK" public_interface="out" units="fmol"/>
        <variable name="q_LR_global" public_interface="in" units="fmol"/>
        <!-- Bond variables-->
        <variable name="vsig1" units="fmol_per_sec"/>
        <variable name="vsig2" units="fmol_per_sec"/>
        <variable name="vsig3" units="fmol_per_sec"/>
        <variable name="vsig4" units="fmol_per_sec"/>
        <variable name="vB11" units="fmol_per_sec"/>
        <variable name="vB12" units="fmol_per_sec"/>
        <variable name="vB21" units="fmol_per_sec"/>
        <variable name="vB22" units="fmol_per_sec"/>
        <variable name="vP1" units="fmol_per_sec"/>
        <variable name="vP2" units="fmol_per_sec"/>
        <variable name="mu_L" units="J_per_mol"/>
        <variable name="mu_R" units="J_per_mol"/>
        <variable name="mu_G" units="J_per_mol"/>
        <variable name="mu_LR" units="J_per_mol"/>
        <variable name="mu_RG" units="J_per_mol"/>
        <variable name="mu_LRG" units="J_per_mol"/>
        <variable name="mu_B1d" units="J_per_mol"/>
        <variable name="mu_BARK" units="J_per_mol"/>
        <variable name="mu_LR_BARK" units="J_per_mol"/>
        <variable name="mu_LRG_BARK" units="J_per_mol"/>
        <variable name="mu_B1p" units="J_per_mol"/>
        <variable name="mu_B1tot" units="J_per_mol"/>
        <variable name="mu_PKACI" units="J_per_mol"/>
        <variable name="mu_PKACI_B1p" units="J_per_mol"/>
        <!-- Concentrations - for plotting-->
        <variable name="c_L" public_interface="out" units="uM"/>
        <variable name="c_R" public_interface="out" units="uM"/>
        <variable name="c_G" public_interface="out" units="uM"/>
        <variable name="c_LR" public_interface="out" units="uM"/>
        <variable name="c_RG" public_interface="out" units="uM"/>
        <variable name="c_B1d" public_interface="out" units="uM"/>
        <variable name="c_BARK" public_interface="out" units="uM"/>
        <variable name="c_LR_BARK" public_interface="out" units="uM"/>
        <variable name="c_LRG" public_interface="out" units="uM"/>
        <variable name="c_LRG_BARK" public_interface="out" units="uM"/>
        <variable name="c_B1p" public_interface="out" units="uM"/>
        <variable name="c_B1tot" public_interface="out" units="uM"/>
        <variable name="c_PKACI" public_interface="out" units="uM"/>
        <variable name="c_PKACI_B1p" public_interface="out" units="uM"/>
        <variable initial_value="34.4" name="vol" units="pL"/>
        <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
                <eq/>
                <ci>c_L</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_L</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_R</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_R</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_G</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_G</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_LR</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_LR_global</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_RG</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_RG</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_B1d</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_B1d</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_BARK</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_BARK</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_LR_BARK</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_LR_BARK</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_LRG</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_LRG</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_LRG_BARK</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_LRG_BARK</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_B1p</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_B1p</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_B1tot</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_B1tot</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_PKACI</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_PKACI</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>c_PKACI_B1p</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                        <ci>q_PKACI_B1p</ci>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <!-- Constitutive equations-->
            <apply>
                <eq/>
                <ci>mu_L</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_L</ci>
                            <ci>q_L</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_R</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_R</ci>
                            <ci>q_R</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_G</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_G</ci>
                            <ci>q_G</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_LR</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_LR</ci>
                            <ci>q_LR_global</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_RG</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_RG</ci>
                            <ci>q_RG</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_LRG</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_LRG</ci>
                            <ci>q_LRG</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_B1d</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_B1d</ci>
                            <ci>q_B1d</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_BARK</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_BARK</ci>
                            <ci>q_BARK</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_LR_BARK</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_LR_BARK</ci>
                            <ci>q_LR_BARK</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_LRG_BARK</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_LRG_BARK</ci>
                            <ci>q_LRG_BARK</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_B1p</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_B1p</ci>
                            <ci>q_B1p</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_B1tot</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_B1tot</ci>
                            <ci>q_B1tot</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_PKACI</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_PKACI</ci>
                            <ci>q_PKACI</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>mu_PKACI_B1p</ci>
                <apply>
                    <times/>
                    <ci>R</ci>
                    <ci>T</ci>
                    <apply>
                        <ln/>
                        <apply>
                            <times/>
                            <ci>K_PKACI_B1p</ci>
                            <ci>q_PKACI_B1p</ci>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>vsig1</ci>
                <apply>
                    <minus/>
                    <apply>
                        <times/>
                        <ci>kappa_sig1</ci>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <apply>
                                    <plus/>
                                    <ci>mu_R</ci>
                                    <ci>mu_G</ci>
                                </apply>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                    </apply>
                    <apply>
                        <exp/>
                        <apply>
                            <divide/>
                            <ci>mu_RG</ci>
                            <apply>
                                <times/>
                                <ci>R</ci>
                                <ci>T</ci>
                            </apply>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>vsig2</ci>
                <apply>
                    <minus/>
                    <apply>
                        <times/>
                        <ci>kappa_sig2</ci>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <apply>
                                    <plus/>
                                    <ci>mu_RG</ci>
                                    <ci>mu_L</ci>
                                </apply>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                    </apply>
                    <apply>
                        <exp/>
                        <apply>
                            <divide/>
                            <ci>mu_LRG</ci>
                            <apply>
                                <times/>
                                <ci>R</ci>
                                <ci>T</ci>
                            </apply>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>vsig3</ci>
                <apply>
                    <minus/>
                    <apply>
                        <times/>
                        <ci>kappa_sig3</ci>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <apply>
                                    <plus/>
                                    <ci>mu_LR</ci>
                                    <ci>mu_G</ci>
                                </apply>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                    </apply>
                    <apply>
                        <exp/>
                        <apply>
                            <divide/>
                            <ci>mu_LRG</ci>
                            <apply>
                                <times/>
                                <ci>R</ci>
                                <ci>T</ci>
                            </apply>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>vsig4</ci>
                <apply>
                    <minus/>
                    <apply>
                        <times/>
                        <ci>kappa_sig4</ci>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <apply>
                                    <plus/>
                                    <ci>mu_R</ci>
                                    <ci>mu_L</ci>
                                </apply>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                    </apply>
                    <apply>
                        <exp/>
                        <apply>
                            <divide/>
                            <ci>mu_LR</ci>
                            <apply>
                                <times/>
                                <ci>R</ci>
                                <ci>T</ci>
                            </apply>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>vB11</ci>
                <apply>
                    <times/>
                    <ci>kappa_B11</ci>
                    <apply>
                        <minus/>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <apply>
                                    <plus/>
                                    <ci>mu_LR</ci>
                                    <ci>mu_BARK</ci>
                                </apply>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <ci>mu_LR_BARK</ci>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>vB12</ci>
                <apply>
                    <times/>
                    <ci>kappa_B12</ci>
                    <apply>
                        <minus/>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <ci>mu_LR_BARK</ci>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <apply>
                                    <plus/>
                                    <ci>mu_BARK</ci>
                                    <ci>mu_B1d</ci>
                                </apply>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>vB21</ci>
                <apply>
                    <times/>
                    <ci>kappa_B21</ci>
                    <apply>
                        <minus/>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <apply>
                                    <plus/>
                                    <ci>mu_LRG</ci>
                                    <ci>mu_BARK</ci>
                                </apply>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <ci>mu_LRG_BARK</ci>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>vB22</ci>
                <apply>
                    <times/>
                    <ci>kappa_B22</ci>
                    <apply>
                        <minus/>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <ci>mu_LRG_BARK</ci>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <apply>
                                    <plus/>
                                    <ci>mu_BARK</ci>
                                    <ci>mu_B1d</ci>
                                </apply>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>vP1</ci>
                <apply>
                    <times/>
                    <ci>kappa_P1</ci>
                    <apply>
                        <minus/>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <apply>
                                    <plus/>
                                    <ci>mu_B1p</ci>
                                    <ci>mu_PKACI</ci>
                                </apply>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <ci>mu_PKACI_B1p</ci>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                    </apply>
                </apply>
            </apply>
            <apply>
                <eq/>
                <ci>vP2</ci>
                <apply>
                    <times/>
                    <ci>kappa_P2</ci>
                    <apply>
                        <minus/>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <ci>mu_PKACI_B1p</ci>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                        <apply>
                            <exp/>
                            <apply>
                                <divide/>
                                <apply>
                                    <plus/>
                                    <ci>mu_PKACI</ci>
                                    <ci>mu_B1tot</ci>
                                </apply>
                                <apply>
                                    <times/>
                                    <ci>R</ci>
                                    <ci>T</ci>
                                </apply>
                            </apply>
                        </apply>
                    </apply>
                </apply>
            </apply>
        </math>
        <variable name="v1b_kinetic" units="uM_per_sec"/>
        <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
                <eq/>
                <ci>v1b_kinetic</ci>
                <apply>
                    <divide/>
                    <apply>
                        <times/>
                        <ci>vB12</ci>
                        <cn cellml:units="m_to_u" type="e-notation">1<sep/>3</cn>
                    </apply>
                    <ci>vol</ci>
                </apply>
            </apply>
            <!--  BG model-->
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_L</ci>
                </apply>
                <apply>
                    <minus/>
                    <apply>
                        <minus/>
                        <ci>vsig2</ci>
                    </apply>
                    <ci>vsig4</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_R</ci>
                </apply>
                <apply>
                    <minus/>
                    <apply>
                        <minus/>
                        <ci>vsig1</ci>
                    </apply>
                    <ci>vsig4</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_G</ci>
                </apply>
                <apply>
                    <minus/>
                    <apply>
                        <minus/>
                        <ci>vsig1</ci>
                    </apply>
                    <ci>vsig3</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_LR</ci>
                </apply>
                <apply>
                    <plus/>
                    <apply>
                        <minus/>
                        <apply>
                            <minus/>
                            <ci>vB11</ci>
                        </apply>
                        <ci>vsig3</ci>
                    </apply>
                    <ci>vsig4</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_RG</ci>
                </apply>
                <apply>
                    <minus/>
                    <ci>vsig1</ci>
                    <ci>vsig2</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_B1d</ci>
                </apply>
                <apply>
                    <plus/>
                    <ci>vB12</ci>
                    <ci>vB22</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_BARK</ci>
                </apply>
                <apply>
                    <minus/>
                    <apply>
                        <minus/>
                        <apply>
                            <plus/>
                            <ci>vB12</ci>
                            <ci>vB22</ci>
                        </apply>
                        <ci>vB11</ci>
                    </apply>
                    <ci>vB21</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_LR_BARK</ci>
                </apply>
                <apply>
                    <minus/>
                    <ci>vB11</ci>
                    <ci>vB12</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_LRG</ci>
                </apply>
                <apply>
                    <plus/>
                    <apply>
                        <minus/>
                        <ci>vB21</ci>
                    </apply>
                    <ci>vsig2</ci>
                    <ci>vsig3</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_LRG_BARK</ci>
                </apply>
                <apply>
                    <minus/>
                    <ci>vB21</ci>
                    <ci>vB22</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_B1p</ci>
                </apply>
                <apply>
                    <minus/>
                    <ci>vP1</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_B1tot</ci>
                </apply>
                <ci>vP2</ci>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_PKACI</ci>
                </apply>
                <apply>
                    <minus/>
                    <ci>vP2</ci>
                    <ci>vP1</ci>
                </apply>
            </apply>
            <apply>
                <eq/>
                <apply>
                    <diff/>
                    <bvar>
                        <ci>time</ci>
                    </bvar>
                    <ci>q_PKACI_B1p</ci>
                </apply>
                <apply>
                    <minus/>
                    <ci>vP1</ci>
                    <ci>vP2</ci>
                </apply>
            </apply>
        </math>
    </component>
    <connection>
        <map_components component_1="environment" component_2="B1AR"/>
        <map_variables variable_1="time" variable_2="time"/>
        <map_variables variable_1="q_LR_global" variable_2="q_LR_global"/>
    </connection>
    <connection>
        <map_components component_1="constants" component_2="B1AR"/>
        <map_variables variable_1="R" variable_2="R"/>
        <map_variables variable_1="T" variable_2="T"/>
    </connection>
</model>