- Author:
- WeiweiAi <wai484@aucklanduni.ac.nz>
- Date:
- 2021-09-30 13:14:32+13:00
- Desc:
- fix the typos and tables in doc
- Permanent Source URI:
- https://models.cellml.org/workspace/6bb/rawfile/5766fc294ca1fb80e47e776c78d754cad7f5fc7f/Simulation/src/Fig7_plot.py
import numpy as np
import matplotlib.pyplot as plt
import pandas as pd
# The prefix of the saved output file name
prefilenames = ['simFig7A','simFig7B']
ofilenames = ['fig7A', 'fig7B']
# Figure name
prefig = 'Fig7'
figfile = 'sim%s' % prefig
# Set figure dimension (width, height) in inches.
fw, fh = 7, 10
fig = plt.figure(figsize=(fw,fh))
ax, lns = {}, {}
# This gives list with the colors from the cycle, which you can use to iterate over.
cycle = plt.rcParams['axes.prop_cycle'].by_key()['color']
# Set subplots
lfontsize, labelfontsize = 10, 12 # legend, label fontsize
duration = [160]
# Read data from the files
t_ss =[0, 0, 0]
x_name = ['time','V']
y_name = ["Cai", "rho_vCa", ]
y_labels = ['(A) [Ca]$_i$ (nM)', r'(B) - $\rho_{vCa}$']
x_labels = ['Time (s)','Vm (mV)',]
Nai=[ 2.9836]
K_Cahalf =[3, 11, 15]
# Set subplots
subpRow, subpCol = len(prefilenames), 1
for h, plotN in enumerate(prefilenames):
ax[h] = fig.add_subplot(subpRow, subpCol, h+1)
if h == 0:
for i in range(3):
ofilename ='../originalData/%s%d.csv' % (ofilenames[h],i+1)
odata = pd.read_csv(ofilename)
ox_data = odata['x']
oy_data = odata['Curve1']
ax[h].plot(ox_data, oy_data, '.', color=cycle[i], label = 'Bursztyn et al' )
filename='../simulatedData/%s_%d.csv' % (prefilenames[h], i)
data = pd.read_csv(filename)
x_data = data[x_name[h]]-t_ss[i]
y_data = data[y_name[h]]*1000000
ax[h].plot(x_data, y_data, color=cycle[i], label = 'K$_{Ca,1/2}$=%d mV' % K_Cahalf[i])
ax[h].set_ylabel (y_labels[h], fontsize= labelfontsize)
ax[h].set_xlabel (x_labels[h], fontsize= labelfontsize)
ax[h].set_title('%s in the primary publication' % (prefig))
ax[h].legend(loc = 'upper center', bbox_to_anchor=(0.56, 1.0), ncol=3, fontsize=lfontsize, frameon=False)
else:
for i in range(3):
ofilename ='../originalData/%s%d.csv' % (ofilenames[h],i+1)
odata = pd.read_csv(ofilename)
ox_data = odata['x']
oy_data = odata['Curve1']
ax[h].plot(ox_data, oy_data, '.', color=cycle[i], label = 'Bursztyn et al, K$_{Ca,1/2}$ = %dmV' % K_Cahalf[i])
filename='../simulatedData/%s_%d.csv' % (prefilenames[h], i)
data = pd.read_csv(filename)
x_data = data[x_name[h]]
y_data = data[y_name[h]]
ax[h].plot(x_data, y_data, color=cycle[i], label = 'K$_{Ca,1/2}$ = %dmV' % K_Cahalf[i])
ax[h].set_ylabel (y_labels[h], fontsize= labelfontsize)
ax[h].set_xlabel (x_labels[h], fontsize= labelfontsize)
ax[h].legend(loc = 'center right', bbox_to_anchor=(1, 0.4), fontsize=lfontsize, frameon=False)
plt.tick_params(direction='in', axis='both')
figfiles = '../%s.png' % (figfile)
plt.savefig(figfiles)
plt.show()
