- Author:
- WeiweiAi <wai484@aucklanduni.ac.nz>
- Date:
- 2022-05-03 15:18:13+12:00
- Desc:
- Seperate the setlim for plotExp.py;
Update readme.txt
- Permanent Source URI:
- https://models.cellml.org/workspace/6bc/rawfile/c05a1749b3003de5c15cc530b579b4671106b978/Scripts/readme.txt
1. The documentation of Python support when using OpenCOR: https://opencor.github.io/user/pythonSupport.html#pythonsupport
2. Install a Python package (e.g, pandas) in PowerShell:
(1) Navigate to the OpenCOR installation folder, e.g., cd C:\Users\wai484\Documents\OpenCOR
(2) Type "./jupyterconsole.bat"
(3) !pip install pandas
(4) Here is an example of command history:
(venvCellML) PS C:\Users\wai484\Documents\OpenCOR> ./jupyterconsole.bat
Jupyter console 6.0.0
Jupyter kernel for OpenCOR
!pip install pandas
3. The procedure of converting .txt file to .cellml in PowerShell:
(1) # The OpenCOR installation folder path
$dpath= 'C:/Users/wai484/Documents/OpenCOR'
(2) # The model directory where .txt and .cellml are saved
$mpath='C:/Users/wai484/Documents/SinglePASMC/Experiments'
(3) # Execute the command to do the conversion
.$dpath/OpenCOR -c CellMLTextView::export $mpath/PASMC_test.txt | out-file $mpath/PASMC_test.cellml -encoding utf8
4. Run OpenCOR simulation using Python shell in PowerShell:
(1) # The OpenCOR installation folder path
$dpath= 'C:/Users/wai484/Documents/OpenCOR'
(2) # The simulation Python script directory where the script is present
$mpath='C:/Users/wai484/Documents/SinglePASMC/Simulation/src'
(3) # The simulation Python script
$mfile='simFig4.py'
(4) # Run the simulation script using Python shell
.$dpath/pythonshell.bat $mpath/$mfile
