- Author:
- David Brooks <dave@bcs.co.nz>
- Date:
- 2021-06-04 12:06:37+12:00
- Desc:
- Move connectivity from `properties` file into separate JSON files, adding some annotation to the Keast bladder model.
- Permanent Source URI:
- https://models.cellml.org/workspace/6d3/rawfile/b35f726b87e99aa70a9c5242dbfdd37eb5305b28/rat_connectivity.json
{
"id": "rat-connectivity",
"paths": [
{
"id": "path_13",
"type": "cns",
"path": "P104",
"route": "brain_17, C28, brain13_1"
},
{
"id": "path_14",
"type": "cns",
"path": "P105",
"route": "brain_20, C29, brain13_1"
},
{
"id": "path_15",
"type": "cns",
"path": "P106",
"route": "brain_18, C30, brain13_1"
},
{
"id": "path_16",
"type": "cns",
"path": "P107",
"route": "brain_19, C31, brain13_1"
},
{
"id": "path_17",
"type": "cns",
"path": "P108",
"route": "brain_16, C32, brain13_1"
},
{
"id": "path_18",
"type": "cns",
"path": "P109",
"route": "brain_15, C33, brain13_1"
},
{
"id": "path_19",
"type": "cns",
"path": "P110",
"route": "brain_14, C34, brain13_1"
},
{
"id": "path_20",
"type": "symp-pre",
"path": "P111, P112",
"route": "brain13_1, C35, C36, C37, (S39_L6, S39_L7)"
},
{
"id": "path_21",
"type": "symp-pre",
"path": "P113",
"route": "brain12_1, C43, C44, S39_T1"
},
{
"id": "path_22",
"type": "symp-pre",
"path": "P114",
"route": "brain11_1, C45, C46, S39_T1"
},
{
"id": "path_23",
"type": "symp-pre",
"path": "P115",
"route": "brain9_1, C47, C48, S39_T1"
},
{
"id": "path_24",
"type": "somatic",
"path": "P116",
"route": "bolser20_1, bolser20_2, muscle_2",
"nerves": "bolser10_1, bolser_8"
},
{
"id": "path_25",
"type": "symp-post",
"path": "P117",
"route": "bolser20_1, bolser20_2, muscle_2",
"nerves": "bolser2_1"
},
{
"id": "path_26",
"type": "symp-post",
"path": "P118",
"route": "bolser20_1, bolser20_2, respiratory11_1",
"nerves": "bolser2_1, bolser26_1, bolser_12, bolser_3"
},
{
"id": "path_27",
"type": "symp-post",
"path": "P119",
"route": "bolser20_1, bolser20_2, respiratory11_1",
"nerves": "bolser2_1, bolser26_1, bolser_12, bolser_11"
},
{
"id": "path_28",
"type": "symp-post",
"path": "P120",
"route": "bolser20_1, bolser20_2, respiratory11_1",
"nerves": "bolser2_1, bolser26_1, bolser21_1, bolser13_1"
},
{
"id": "path_29",
"type": "symp-post",
"path": "P121",
"route": "bolser20_1, bolser20_2, respiratory11_1",
"nerves": "bolser2_1, bolser26_1, bolser21_1, bolser_4"
},
{
"id": "path_30",
"type": "symp-post",
"path": "P122",
"route": "bolser20_1, bolser20_2, respiratory_5",
"nerves": "bolser2_1, bolser26_1, bolser21_1, bolser_4"
},
{
"id": "path_31",
"type": "symp-post",
"path": "P123",
"route": "bolser20_1, bolser20_2, respiratory_5",
"nerves": "bolser2_1, bolser26_1, bolser21_1, bolser13_2"
},
{
"id": "path_32",
"type": "symp-post",
"path": "P124",
"route": "bolser20_1, bolser20_2, respiratory_3"
},
{
"id": "path_33",
"type": "symp-post",
"path": "P125",
"route": "bolser20_1, bolser20_2, respiratory_3",
"nerves": "bolser10_2"
},
{
"id": "path_34",
"type": "symp-post",
"path": "P126",
"route": "bolser20_1, bolser20_2, brain_23_1, brain9_2",
"nerves": "bolser10_2"
},
{
"id": "path_35",
"type": "symp-post",
"path": "P127",
"route": "bolser20_1, bolser20_2, brain_23_2, brain10_2",
"nerves": "bolser10_2"
},
{
"id": "path_36",
"type": "symp-post",
"path": "P128",
"route": "bolser20_1, bolser20_2, brain_23_3, brain11_2",
"nerves": "bolser10_2"
},
{
"id": "path_37",
"type": "symp-post",
"path": "P129",
"route": "bolser20_1, bolser20_2, brain_23_4, brain12_2",
"nerves": "bolser10_2"
},
{
"id": "path_38",
"type": "symp-post",
"path": "P130",
"route": "bolser20_1, bolser20_2, cardio_4",
"nerves": "bolser2_2, bolser_6"
},
{
"id": "path_39",
"type": "symp-post",
"path": "P131",
"route": "bolser20_1, bolser20_2, cardio_5",
"nerves": "bolser2_2, bolser_6"
},
{
"id": "path_40",
"type": "symp-post",
"path": "P132",
"route": "spinal_54, C49, respiratory_4",
"nerves": "bolser_17"
},
{
"id": "path_41",
"type": "symp-post",
"path": "P133",
"route": "spinal_55, C50, respiratory_4",
"nerves": "bolser_17"
},
{
"id": "path_42",
"type": "somatic",
"path": "P134, P135",
"route": "S39_T1, C51, S43_T1, S50_T1_T, S50_T1_B, muscle_1"
},
{
"id": "path_43",
"type": "sensory",
"path": "P136",
"route": "respiratory_12, respiratory11_1, bolser_15, C39, brain12_2",
"nerves": "bolser_16, bolser26_2"
},
{
"id": "path_44",
"type": "sensory",
"path": "P137",
"route": "respiratory_8, respiratory_5, bolser_15, C40, brain12_2",
"nerves": "bolser21_2, bolser26_2"
},
{
"id": "path_45",
"type": "sensory",
"path": "P138",
"route": "cardio_13, cardio_3, bolser_15, C38, brain12_2",
"nerves": "bolser_1, bolser26_2"
},
{
"id": "path_46",
"type": "sensory",
"path": "P139",
"route": "cardio_4, bolser_18, C41, brain12_2",
"nerves": "bolser_19, bolser_5"
},
{
"id": "path_47",
"type": "sensory",
"path": "P140",
"route": "cardio_5, bolser_18, C42, brain12_2",
"nerves": "bolser_7, bolser_5"
},
{
"id": "path_48",
"type": "symp-post",
"path": "P141",
"route": "bolser20_1, bolser_23, bolser_14, bolser_24, cardio_3, cardio_13"
},
{
"id": "path_49",
"type": "symp-pre",
"path": "P208",
"route": "S39_T1, C80, S43_T1, S50_T1_T, S50_T1_B, S48_T1, bolser_25, bolser_9, bolser_24, bolser_14, bolser_23, bolser_20_1"
},
{
"id": "path_50",
"type": "para-pre",
"path": "P142, P143, P144, P145, P146",
"route": "(brain_33, brain_34), C52, C53, C58, C59, C54, C55, (ardell_1, ardell_2)"
},
{
"id": "path_51",
"type": "symp-pre",
"path": "P151, P152, P153, P154, P155, P156, P157, P158, P159, P160, P161, P162, P163, P164, P165, P166, P167, P168, P169, P170, P171, P172, P173, P174, P175, P176, P177",
"route": "(S39_T1, S39_T2, S39_T3, S39_T4, S39_T5, S39_T6), C63, C64, C65, C66, C67, C68, S43_T1, S50_T1_T, S50_T1_B, S48_T1, S43_T2, S50_T2_T, S50_T2_B, S48_T2, S43_T3, S50_T3_T, S50_T3_B, S48_T3, S43_T4, S50_T4_T, S50_T4_B, S48_T4, S43_T5, S50_T5_T, S50_T5_B, S48_T5, S43_T6, S50_T6_T, S50_T6_B, S48_T6, spinal_47, C69, C70, C71, C72, C73, C74, C75, C76, C77, C62, C60, C56, bolser_25, bolser_23, bolser_24, (S46_T2, S46_T3, S46_T4, S46_T5, S46_T6, connection1_1, bolser_9, bolser_14, bolser20_1, ardell_1, ardell_2, ardell_3)"
},
{
"id": "path_52",
"type": "lcn",
"path": "P178",
"route": "bolser_9, C76, C78, bolser_9"
},
{
"id": "path_53",
"type": "lcn",
"path": "P179",
"route": "bolser_14, C75, C79, bolser_14"
},
{
"id": "path_54",
"type": "symp-post",
"path": "P180, P181, P182, P183, P184, P185, P186, P187, P188, P189, P190, P191, P192, P193, P194, P195, P196, P197, P198, P199, P200, P201, P202, P203, P204, P205, P206",
"route": "(S46_T6, S46_T5, S46_T4, S46_T3, S46_T2, connection1_1, bolser_9, bolser_14, bolser20_1, ardell_3), C77, C76, C75, C74, C73, C72, C71, C70, C69, C62, C58, C54, (ardell_2, ardell_1, cardio_18, cardio_19, cardio_20, cardio_21, cardio_22, cardio_23, cardio_24,cardio_25)"
},
{
"id": "path_55",
"type": "lcn",
"path": "P147, P148",
"route": "ardell_2, C54, C55, C56, ardell_2"
},
{
"id": "path_56",
"type": "lcn",
"path": "P149, P150",
"route": "ardell_1, C58, C59, C60, ardell_1"
},
{
"id": "path_57",
"type": "cns",
"path": "P207",
"route": "brain12_1, C159, brain_32"
},
{
"id": "path_58",
"type": "para-post",
"path": "P209, P210, P211, P212, P213, P214, P215, P216",
"route": "(ardell_1, ardell_2), C55, C59, (cardio_18, cardio_19, cardio_20, cardio_21, cardio_22, cardio_23, cardio_24, cardio_25)"
},
{
"id": "path_59",
"type": "sensory",
"path": "P217, P218, P219, P220, P221, P222, P223, P224",
"route": "(cardio_18, cardio_19, cardio_20, cardio_21, cardio_22, cardio_23, cardio_24, cardio_25), C57, C61, C56, C60, (ardell_1, ardell_2)"
},
{
"id": "path_60",
"type": "sensory",
"path": "P225, P226, P227, P228, P229, P230, P231, P232, P233",
"route": "(cardio_16, cardio_17, cardio_18, cardio_19, cardio_20, cardio_21, cardio_22, cardio_23), bolser_15, C81, brain12_2"
},
{
"id": "path_61",
"type": "sensory",
"path": "P234, P235, P236, P237, P238, P239, P240, P241, P242, P243, P244, P245, P246, P247, P248, P249, P250, P251, P252",
"route": "(cardio_22, cardio_23, cardio_24, cardio_25), S50_C6_T, S45_C6, C82, S50_C7_T, S45_C7, C83, S50_C8_T, S45_C8, C84, S50_T1_B, S50_T1_T, S45_T1, C85, S50_T2_B, S50_T2_T, S45_T2, C86, S50_T3_B, S50_T3_T, S45_T3, C87, S50_T4_B, S50_T4_T, S45_T4, C88, S50_T5_B, S50_T5_T, S45_T5, C89, S50_T6_B, S50_T6_T, S45_T6, C90,(S44_C6, S44_C7, S44_C8, S44_T1, S44_T2, S44_T3, S44_T4, S44_T5, S44_T6)"
},
{
"id": "path_62",
"type": "sensory",
"path": "P253, P254, P255",
"route": "(cardio_16, cardio_17), C91, C92, C79, C78, (bolser_9, bolser_14)"
},
{
"id": "path_63",
"type": "sensory",
"path": "P256, P257, P258, P259, P284",
"route": "(digestive_39, digestive_38, digestive_37, digestive_36), bolser_15, C105, brain12_2"
},
{
"id": "path_64",
"type": "symp-post",
"path": "P285, P260",
"route": "mawe_1, C106, digestive_42"
},
{
"id": "path_65",
"type": "somatic",
"path": "P286, P264",
"route": "digestive_36, C96, mawe_1, C108"
},
{
"id": "path_66",
"type": "somatic",
"path": "P289, P265",
"route": "digestive_36, C97, mawe_1, C10"
},
{
"id": "path_67",
"type": "symp-post",
"path": "P287, P266",
"route": "mawe_1, C108, digestive_38, C98"
},
{
"id": "path_68",
"type": "symp-post",
"path": "P288, P271",
"route": "mawe_1, C107, digestive_36, C100"
},
{
"id": "path_69",
"type": "symp-post",
"path": "P290, P278",
"route": "mawe_1, C109, circulatory_1"
},
{
"id": "path_70",
"type": "symp-post",
"path": "P316, P317, P318, P319, P320, P321, P322, P323, P324, P325, P279",
"route": "(S46_L2, S46_L1, S46_T13, S46_T12, S46_T11, S46_T10, S46_T9, S46_T8, S46_T7, S46_T6), C110, S49_L2, S50_L2_B, C111, S49_L1, S50_L1_B, C112, S49_T13, S50_T13_B, C113, S49_T12, S50_T12_B, C114, S49_T11, S50_T11_B, C115, S49_T10, S50_T10_B, C116, S49_T9, S50_T9_B, C117, S49_T8, S50_T8_B, C118, S49_T7, S50_T7_B, C119, S49_T6, S50_T6_B, circulatory_1"
},
{
"id": "path_71",
"type": "sensory",
"path": "P280, P281, P282, P283, P336, P337, P338, P339, P340, P341, P342, P343, P344, P345, P350, P351, P352, P353, P354, P355, P356, P357, P358, P359",
"route": "(digestive_34, digestive_36, digestive_38, digestive_39), S50_L2_B, S50_L2_T, S45_L2, C128 , S50_L1_B, S50_L1_T, S45_L1, C129, S50_T13_B, S50_T13_T, S45_T13, C130, S50_T12_B, S50_T12_T, S45_T12, C131, S50_T11_B, S50_T11_T, S45_T11, C132, S50_T10_B, S50_T10_T, S45_T10, C133, S50_T9_B, S50_T9_T, S45_T9, C134, S50_T8_B, S50_T8_T, S45_T8, C135, S50_T7_B, S50_T7_T, S45_T7, C136, S50_T6_B, S50_T6_T, S45_T6, C137, (S44_L2, S44_L1, S44_T13, S44_T12, S44_T11, S44_T10, S44_T9, S44_T8, S44_T7, S44_T6)"
},
{
"id": "path_72",
"type": "symp-pre",
"path": "P294, P295, P291, P292, P293, P331, P332, P333, P334, P335, P306, P307, p308, P309, P310, P311, P312, P313, P314, P315",
"route": "(S39_L2, S39_L1, S39_T13, S39_T12, S39_T11, S39_T10, S39_T9, S39_T8, S39_T7, S39_T6), C139, C138, C127, C126, C125, C124, C123, C122, C121, C120, S43_L2, S43_L1, S43_T13, S43_T12, S43_T11, S43_T10, S43_T9, S43_T8, S43_T7, S43_T6, S50_L2_T, S50_L1_T, S50_T13_T, S50_T12_T, S50_T11_T, S50_T10_T, S50_T9_T, S50_T8_T, S50_T7_T, S50_T6_T, S50_L2_B, S50_L1_B, S50_T13_B, S50_T12_B, S50_T11_B, S50_T10_B, S50_T9_B, S50_T8_B, S50_T7_B, S50_T6_B, S48_L2, S48_L1, S48_T13, S48_T12, S48_T11, S48_T10, S48_T9, S48_T8, S48_T7, S48_T6, C110, spinal_47, C111, spinal_47, C112, spinal_47, C113, spinal_47, C114, spinal_47, C115, spinal_47, C116, spinal_47, C117, spinal_47, C118, spinal_47, C119, (S46_L2, S46_L1, S46_T13, S46_T12, S46_T11, S46_T10, S46_T9, S46_T8, S46_T7, S46_T6)"
},
{
"id": "path_73",
"type": "somatic",
"path": "P261",
"route": "digestive_36, C93, digestive_35"
},
{
"id": "path_74",
"type": "somatic",
"path": "P276",
"route": "digestive_36, C102, digestive_35"
},
{
"id": "path_75",
"type": "somatic",
"path": "P262",
"route": "digestive_36, C94, digestive_37"
},
{
"id": "path_76",
"type": "somatic",
"path": "P277",
"route": "digestive_36, C103, digestive_37"
},
{
"id": "path_77",
"type": "lcn",
"path": "P263",
"route": "digestive_36, C95, C93, C94, digestive_36"
},
{
"id": "path_78",
"type": "lcn",
"path": "P275",
"route": "digestive_36, C101, C102, C103, digestive_36"
},
{
"id": "path_79",
"type": "sensory",
"path": "P267, P268, P269",
"route": "digestive_39, C98, C99, C104, (digestive_38, digestive_36, digestive_38)"
},
{
"id": "path_80",
"type": "sensory",
"path": "P272, P273",
"route": "(digestive_39, digestive_38), C100, digestive_36"
},
{
"id": "path_81",
"type": "somatic",
"path": "P274",
"route": "digestive_38, C104, circulatory_1"
},
{
"id": "path_82",
"type": "somatic",
"path": "P270",
"route": "digestive_38, C99, digestive_39"
},
{
"id": "path_83",
"type": "para-pre",
"path": "P360, P361, P362, P363, P364, P365, P366, P367",
"route": "brain_33 ,C144, (lung_1_1, lung_1_2, lung_1_3, lung_1_4)",
"nerves": "bolser26_3"
},
{
"id": "path_84",
"type": "para-post",
"path": "P368, P369, P370, P371, P372, P373, P374, P375",
"route": "(lung_1_1, lung_1_2, lung_1_3, lung_1_4), C140, C141, C142, C143, (respiratory_16, respiratory_17, respiratory_18, respiratory_19)"
},
{
"id": "path_85",
"type": "symp-pre",
"path": "P376, P377, P378, P379, P380, P381, P382, P383, P384, P385, P386, P387, P388, P389, P390, P391, P392, P393, P394, P395, P396, P397, P398, P399, P400, P401, P402, P403",
"route": "(S39_L1, S39_T13, S39_T12, S39_T11, S39_T10, S39_T9, S39_T8, S39_T7, S39_T6, S39_T5, S39_T4, S39_T3, S39_T2, S39_T1), C145,C146, C147, C148, C149, C150, C151, C152, C153, C154, C155, C156, C157, C158, S43_L1, S43_T13, S43_T12, S43_T11, S43_T10, S43_T9, S43_T8, S43_T7, S43_T6, S43_T5, S43_T4, S43_T3, S43_T2, S43_T1, S50_L1_T, S50_T13_T, S50_T12_T, S50_T11_T, S50_T10_T, S50_T9_T, S50_T8_T, S50_T7_T, S50_T6_T, S50_T5_T, S50_T4_T, S50_T3_T, S50_T2_T, S50_T1_T, S50_L1_B, S50_T13_B, S50_T12_B, S50_T11_B, S50_T10_B, S50_T9_B, S50_T8_B, S50_T7_B, S50_T6_B, S50_T5_B, S50_T4_B, S50_T3_B, S50_T2_B, S50_T1_B, S48_L1, S48_T13, S48_T12, S48_T11, S48_T10, S48_T9, S48_T8, S48_T7, S48_T6, S48_T5, S48_T4, S48_T3, S48_T2, S48_T1, S49_L1, S49_T13, S49_T12, S49_T11, S49_T10, S49_T9, S49_T8, S49_T7, S49_T6, S49_T5, S49_T4, S49_T3, S49_T2, S49_T1, S50_L1_B, S50_T13_B, S50_T12_B, S50_T11_B, S50_T10_B, S50_T9_B, S50_T8_B, S50_T7_B, S50_T6_B, S50_T5_B, S50_T4_B, S50_T3_B, S50_T2_B, S50_T1_B, endocrine_5",
"nerves": "lung_2"
}
]
}
