Location: BG_K @ 9d6719177e83 / BG_K.cellml
- Author:
- Shelley Fong <s.fong@auckland.ac.nz>
- Date:
- 2022-04-20 10:56:13+12:00
- Desc:
- storing gate particle number in comp environment
- Permanent Source URI:
- https://models.cellml.org/workspace/823/rawfile/9d6719177e83db1f7662b4a271f68cf38ae67094/BG_K.cellml
<?xml version='1.0' encoding='UTF-8'?>
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<units name="J_per_K_per_mol">
<unit units="joule"/>
<unit exponent="-1" units="kelvin"/>
<unit exponent="-1" units="mole"/>
</units>
<units name="C_per_mol">
<unit units="coulomb"/>
<unit exponent="-1" units="mole"/>
</units>
<units name="fF">
<unit prefix="femto" units="farad"/>
</units>
<units name="fmol">
<unit prefix="femto" units="mole"/>
</units>
<units name="per_fmol">
<unit exponent="-1" units="fmol"/>
</units>
<units name="fmol_per_sec">
<unit units="fmol"/>
<unit exponent="-1" units="second"/>
</units>
<units name="fC">
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</units>
<units name="fA">
<unit prefix="femto" units="ampere"/>
</units>
<units name="J_per_mol">
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<unit exponent="-1" units="mole"/>
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<variable initial_value="96485" name="F" public_interface="out" units="C_per_mol"/>
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<variable initial_value="27.9828" name="q_K_o" public_interface="out" units="fmol"/>
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<variable initial_value="6.54665E-07" name="q_S00_K" public_interface="out" units="fmol"/>
<variable initial_value="1.63666E-07" name="q_S01_K" public_interface="out" units="fmol"/>
<variable initial_value="3.27332E-07" name="q_S10_K" public_interface="out" units="fmol"/>
<variable initial_value="8.18331E-08" name="q_S11_K" public_interface="out" units="fmol"/>
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<variable initial_value="1.02291E-08" name="q_S21_K" public_interface="out" units="fmol"/>
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<!-- var q_S00_K: fmol {init: 4.5648e-06};
var q_S01_K: fmol {init: 1.1412e-06};
var q_S10_K: fmol {init: 2.2824e-06};
var q_S11_K: fmol {init: 5.706e-07};
var q_S20_K: fmol {init: 2.853e-07};
var q_S21_K: fmol {init: 7.1325e-08};-->
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<variable name="q_S01_K" public_interface="in" units="fmol"/>
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<variable name="q_S20_K" public_interface="in" units="fmol"/>
<variable name="q_S21_K" public_interface="in" units="fmol"/>
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<variable name="mu_S20_K" units="J_per_mol"/>
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<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S11_K</ci>
<ci>q_S11_K</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>z_fX</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Af_i00</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S00_K</ci>
<ci>q_S00_K</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>z_fXi</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Af_i10</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S10_K</ci>
<ci>q_S10_K</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>z_fXi</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Af_i20</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S20_K</ci>
<ci>q_S20_K</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>z_fXi</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Am_K</ci>
<apply>
<times/>
<ci>zK</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>Ar_K</ci>
<apply>
<plus/>
<ci>mu_K_o</ci>
<ci>mu_S21_K</ci>
<apply>
<times/>
<ci>nK</ci>
<ci>mu_K_o</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Ar_X00</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S10_K</ci>
<ci>q_S10_K</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>z_rX</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Ar_X01</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S11_K</ci>
<ci>q_S11_K</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>z_rX</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Ar_X10</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S20_K</ci>
<ci>q_S20_K</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>z_rX</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Ar_X11</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S21_K</ci>
<ci>q_S21_K</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>z_rX</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Ar_i00</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S01_K</ci>
<ci>q_S01_K</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>z_rXi</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Ar_i10</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S11_K</ci>
<ci>q_S11_K</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>z_rXi</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Ar_i20</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S21_K</ci>
<ci>q_S21_K</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>z_rXi</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_S00_K</ci>
<apply>
<minus/>
<apply>
<minus/>
<ci>v_X00</ci>
</apply>
<ci>v_i00</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_S01_K</ci>
<apply>
<plus/>
<apply>
<minus/>
<ci>v_X01</ci>
</apply>
<ci>v_i00</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_S10_K</ci>
<apply>
<minus/>
<apply>
<minus/>
<ci>v_X00</ci>
<ci>v_X10</ci>
</apply>
<ci>v_i10</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_S11_K</ci>
<apply>
<plus/>
<apply>
<minus/>
<ci>v_X01</ci>
<ci>v_X11</ci>
</apply>
<ci>v_i10</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_S20_K</ci>
<apply>
<minus/>
<ci>v_X10</ci>
<ci>v_i20</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_S21_K</ci>
<apply>
<minus/>
<apply>
<plus/>
<ci>v_X11</ci>
<ci>v_i20</ci>
</apply>
<apply>
<minus/>
<ci>v_K</ci>
<ci>v_K</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_S00_K</ci>
</apply>
<ci>v_S00_K</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_S01_K</ci>
</apply>
<ci>v_S01_K</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_S10_K</ci>
</apply>
<ci>v_S10_K</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_S11_K</ci>
</apply>
<ci>v_S11_K</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_S20_K</ci>
</apply>
<ci>v_S20_K</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_S21_K</ci>
</apply>
<ci>v_S21_K</ci>
</apply>
<apply>
<eq/>
<ci>v_K</ci>
<piecewise>
<piece>
<apply>
<times/>
<ci>kappa_K</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_K</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_K</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Am_K</ci>
<cn cellml:units="J_per_mol">0</cn>
</apply>
</piece>
<otherwise>
<apply>
<times/>
<apply>
<divide/>
<apply>
<divide/>
<apply>
<times/>
<ci>kappa_K</ci>
<ci>Am_K</ci>
</apply>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Am_K</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<cn cellml:units="dimensionless">1</cn>
</apply>
</apply>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_K</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_K</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</otherwise>
</piecewise>
</apply>
</math>
</component>
<connection>
<map_components component_1="K" component_2="K_parameters"/>
<map_variables variable_1="K_S00_K" variable_2="K_S00_K"/>
<map_variables variable_1="K_S01_K" variable_2="K_S01_K"/>
<map_variables variable_1="K_S10_K" variable_2="K_S10_K"/>
<map_variables variable_1="K_S11_K" variable_2="K_S11_K"/>
<map_variables variable_1="K_S20_K" variable_2="K_S20_K"/>
<map_variables variable_1="K_S21_K" variable_2="K_S21_K"/>
<map_variables variable_1="K_K_o" variable_2="K_K_o"/>
<map_variables variable_1="K_K_i" variable_2="K_K_i"/>
<map_variables variable_1="kappa_K" variable_2="kappa_K"/>
<map_variables variable_1="kappa_X00_K" variable_2="kappa_X00_K"/>
<map_variables variable_1="kappa_X01_K" variable_2="kappa_X01_K"/>
<map_variables variable_1="kappa_X10_K" variable_2="kappa_X10_K"/>
<map_variables variable_1="kappa_X11_K" variable_2="kappa_X11_K"/>
<map_variables variable_1="kappa_i00_K" variable_2="kappa_i00_K"/>
<map_variables variable_1="kappa_i10_K" variable_2="kappa_i10_K"/>
<map_variables variable_1="kappa_i20_K" variable_2="kappa_i20_K"/>
<map_variables variable_1="nK" variable_2="nK"/>
<map_variables variable_1="zK" variable_2="zK"/>
<map_variables variable_1="z_fX" variable_2="z_fX"/>
<map_variables variable_1="z_fXi" variable_2="z_fXi"/>
<map_variables variable_1="z_rX" variable_2="z_rX"/>
<map_variables variable_1="z_rXi" variable_2="z_rXi"/>
</connection>
<connection>
<map_components component_1="K" component_2="environment"/>
<map_variables variable_1="t" variable_2="t"/>
<map_variables variable_1="R" variable_2="R"/>
<map_variables variable_1="T" variable_2="T"/>
<map_variables variable_1="F" variable_2="F"/>
<map_variables variable_1="C_m" variable_2="C_m"/>
<map_variables variable_1="q_K_o" variable_2="q_K_o"/>
<map_variables variable_1="q_K_i" variable_2="q_K_i"/>
<map_variables variable_1="q_S00_K" variable_2="q_S00_K"/>
<map_variables variable_1="q_S01_K" variable_2="q_S01_K"/>
<map_variables variable_1="q_S10_K" variable_2="q_S10_K"/>
<map_variables variable_1="q_S11_K" variable_2="q_S11_K"/>
<map_variables variable_1="q_S20_K" variable_2="q_S20_K"/>
<map_variables variable_1="q_S21_K" variable_2="q_S21_K"/>
<map_variables variable_1="v_K" variable_2="v_K"/>
<map_variables variable_1="q_mem" variable_2="q_mem"/>
<map_variables variable_1="I_mem_K" variable_2="I_mem_K"/>
</connection>
</model>