- Author:
- elias-soltani <egha355@aucklanduni.ac.nz>
- Date:
- 2022-02-25 12:42:46+13:00
- Desc:
- Initial upload
- Permanent Source URI:
- https://models.cellml.org/workspace/82f/rawfile/34e8653a2f430dc6276d137ff39c6f4786b12737/README.rst
In this workspace, we have the automatic workflow and configuration files for inserting organs needed to produce the pig whole-body scaffold with embedded organs for the `SPARC <https://commonfund.nih.gov/sparc>`_ project.
.. image:: thumbnail.png
:width: 50%
:alt: Rendering of the pig whole-body scaffold with embedded organs.
A MAP Client workflow is created with a new step (organinserter) in python language to automate insertion of 3D organs into the whole-body scaffolds. The whole-body scaffold along with the organs are passed to the workflow and then it finds the common fiducial markers in the whole-body and each organ. These fiducials then are used to register the organ into the body. The embedded organs include lungs, heart.
Please see the `SPARC Portal <https://sparc.science>`_ for more details about the SPARC project.
