- Author:
- Mabelle Lin <mlin865@aucklanduni.ac.nz>
- Date:
- 2022-09-05 16:23:31+12:00
- Desc:
- Make scaffold reusable in PMR
- Permanent Source URI:
- https://models.cellml.org/workspace/83d/rawfile/55e4c7b57c05aa577264cb3ccb74e07485a0d5bd/OrganScaffold-settings.json
{
"scaffold_settings": {
"deleteElementRanges": "",
"displayAxes": true,
"displayElementAxes": false,
"displayElementNumbers": false,
"displayLines": true,
"displayLinesExterior": false,
"displayMarkerPoints": false,
"displayModelRadius": false,
"displayNodeDerivativeLabels": [
"D1",
"D2",
"D3"
],
"displayNodeDerivatives": 0,
"displayNodeNumbers": false,
"displayNodePoints": false,
"displaySurfaces": true,
"displaySurfacesExterior": true,
"displaySurfacesTranslucent": true,
"displaySurfacesWireframe": false,
"modelCoordinatesField": "coordinates",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Central path": {
"_ScaffoldPackage": true,
"meshEdits": "EX Version: 3\nRegion: /\n!#nodeset nodes\nDefine node template: node1\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\n y. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\n z. #Values=6 (value,d/ds1,d/ds2,d2/ds1ds2,d/ds3,d2/ds1ds3)\nNode template: node1\nNode: 1\n 7.500000000000000e+00 2.800000000000000e+00 9.900000000000000e+00 1.000000000000000e-01 0.000000000000000e+00 0.000000000000000e+00\n 2.898000000000000e+02 -3.360000000000000e+01 8.000000000000000e-01 -1.600000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.000000000000000e+01 0.000000000000000e+00\nNode: 2\n 8.900000000000000e+00 -2.600000000000000e+00 1.000000000000000e+01 1.000000000000000e-01 0.000000000000000e+00 0.000000000000000e+00\n 2.425000000000000e+02 -8.750000000000000e+01 -3.000000000000000e-01 -6.000000000000000e-01 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.000000000000000e+01 0.000000000000000e+00\nNode: 3\n -2.500000000000000e+00 3.900000000000000e+00 1.000000000000000e+01 -3.000000000000000e-01 0.000000000000000e+00 0.000000000000000e+00\n 1.154000000000000e+02 -1.020000000000000e+02 4.000000000000000e-01 1.900000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.000000000000000e+01 0.000000000000000e+00\nNode: 4\n 1.010000000000000e+01 1.780000000000000e+01 9.600000000000000e+00 -1.300000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 4.030000000000000e+01 -5.790000000000000e+01 2.900000000000000e+00 3.200000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.000000000000000e+01 0.000000000000000e+00\nNode: 5\n 2.860000000000000e+01 1.850000000000000e+01 7.700000000000000e+00 -2.400000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n -1.000000000000000e-01 -2.210000000000000e+01 6.500000000000000e+00 3.900000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.000000000000000e+01 0.000000000000000e+00\nGroup name: meshEdits\n!#nodeset nodes\nNode group:\n1..5\n",
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Coordinate dimensions": 3,
"D2 derivatives": true,
"D3 derivatives": true,
"Length": 1.0,
"Number of elements": 4
},
"scaffoldTypeName": "1D Path 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
],
"userAnnotationGroups": [
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "1",
"name": "cervical part of esophagus",
"ontId": "UBERON:0035450"
},
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "2-3",
"name": "thoracic part of esophagus",
"ontId": "UBERON:0035216"
},
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "4",
"name": "abdominal part of esophagus",
"ontId": "UBERON:0035177"
}
]
},
"Circular muscle layer relative thickness": 0.25,
"Longitudinal muscle layer relative thickness": 0.25,
"Mucosa relative thickness": 0.35,
"Number of elements along": 12,
"Number of elements around": 8,
"Number of elements through wall": 4,
"Refine": false,
"Refine number of elements along": 1,
"Refine number of elements around": 1,
"Refine number of elements through wall": 1,
"Submucosa relative thickness": 0.15,
"Use cross derivatives": false,
"Use linear through wall": true,
"Wall thickness": 5.0
},
"scaffoldTypeName": "3D Esophagus 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {
"displayDataContours": true,
"displayDataMarkerNames": true,
"displayDataMarkerPoints": true,
"displayDataPoints": false,
"displayDataRadius": false
}
}
