- Author:
- Shelley Fong <sfon036@UoA.auckland.ac.nz>
- Date:
- 2022-07-13 16:00:34+12:00
- Desc:
- Moving channel states into main environment from individual submodule components
- Permanent Source URI:
- https://models.cellml.org/workspace/885/rawfile/cc50e57955e59c98e8a98a55eb222cdef43c75ff/parameter_finder/output/TEMP.cellml.txt
def model FCU_cardiac_pH as
def import using "units_and_constants/units_BG.cellml" for
unit mM using unit mM;
unit fmol using unit fmol;
unit per_fmol using unit per_fmol;
unit J_per_mol using unit J_per_mol;
unit fmol_per_sec using unit fmol_per_sec;
unit C_per_mol using unit C_per_mol;
unit J_per_C using unit J_per_C;
unit microm3 using unit microm3;
unit fF using unit fF;
unit fC using unit fC;
unit fA using unit fA;
unit per_second using unit per_second;
unit millivolt using unit millivolt;
unit per_sec using unit per_sec;
unit J_per_K_per_mol using unit J_per_K_per_mol;
unit fmol_per_L using unit fmol_per_L;
unit fmol_per_L_per_sec using unit fmol_per_L_per_sec;
unit per_sec_per_fmol_per_L using unit per_sec_per_fmol_per_L;
unit uM using unit uM;
unit mM_per_sec using unit mM_per_sec;
unit uM_per_sec using unit uM_per_sec;
unit pL using unit pL;
unit m_to_u using unit m_to_u;
enddef;
def import using "units_and_constants/constants_BG.cellml" for
comp constants using comp constants;
enddef;
def import using "AE/BG_AE.cellml" for
comp AE using comp AE;
enddef;
def import using "CHE/BG_CHE.cellml" for
comp CHE using comp CHE;
enddef;
def import using "CO2_hyd/BG_CO2_hyd.cellml" for
comp CO2_hyd using comp CO2_hyd;
enddef;
def import using "NBC/BG_NBC.cellml" for
comp NBC using comp NBC;
enddef;
def import using "NHE/BG_NHE.cellml" for
comp NHE using comp NHE;
enddef;
def import using "pH_B1/BG_pH_B1.cellml" for
comp pH_B1 using comp pH_B1;
enddef;
def comp BG_parameters as
var kappa_R61_AE: fmol_per_sec {init: 16989.7, pub: out};
var kappa_R12_AE: fmol_per_sec {init: 9.95603e+09, pub: out};
var kappa_R23_AE: fmol_per_sec {init: 3.34396e+12, pub: out};
var kappa_R34_AE: fmol_per_sec {init: 124813, pub: out};
var kappa_R45_AE: fmol_per_sec {init: 3.53951e+12, pub: out};
var kappa_R56_AE: fmol_per_sec {init: 5.65383e+09, pub: out};
var kappa_R61_pHi_AE: fmol_per_sec {init: 1.51752e-30, pub: out};
var kappa_R12_pHi_AE: fmol_per_sec {init: 3.89362e-30, pub: out};
var kappa_R23_pHi_AE: fmol_per_sec {init: 1.01232e-29, pub: out};
var kappa_R34_pHi_AE: fmol_per_sec {init: 1.09142e-29, pub: out};
var kappa_R45_pHi_AE: fmol_per_sec {init: 1.17671e-29, pub: out};
var kappa_R56_pHi_AE: fmol_per_sec {init: 4.25377e-30, pub: out};
var kappa_R61_pHo_AE: fmol_per_sec {init: 2.47392e+17, pub: out};
var kappa_R12_pHo_AE: fmol_per_sec {init: 6.34754e+17, pub: out};
var kappa_R23_pHo_AE: fmol_per_sec {init: 1.65032e+18, pub: out};
var kappa_R34_pHo_AE: fmol_per_sec {init: 1.77928e+18, pub: out};
var kappa_R45_pHo_AE: fmol_per_sec {init: 1.91832e+18, pub: out};
var kappa_R56_pHo_AE: fmol_per_sec {init: 6.93467e+17, pub: out};
var kappa_R61_CHE: fmol_per_sec {init: 2.66006, pub: out};
var kappa_R12_CHE: fmol_per_sec {init: 0.00948314, pub: out};
var kappa_R23_CHE: fmol_per_sec {init: 894374, pub: out};
var kappa_R34_CHE: fmol_per_sec {init: 0.00338371, pub: out};
var kappa_R45_CHE: fmol_per_sec {init: 5.20571e+07, pub: out};
var kappa_R56_CHE: fmol_per_sec {init: 551967, pub: out};
var kappa_Re_CO2hyd: fmol_per_sec {init: 4.07921e-08, pub: out};
var kappa_R61_NBC: fmol_per_sec {init: 0.00115162, pub: out};
var kappa_R12_NBC: fmol_per_sec {init: 1773.83, pub: out};
var kappa_R23_NBC: fmol_per_sec {init: 0.951701, pub: out};
var kappa_R34_NBC: fmol_per_sec {init: 0.110974, pub: out};
var kappa_R45_NBC: fmol_per_sec {init: 0.0103641, pub: out};
var kappa_R56_NBC: fmol_per_sec {init: 184.891, pub: out};
var kappa_R61_pHi_NBC: fmol_per_sec {init: 7.65077e+19, pub: out};
var kappa_R12_pHi_NBC: fmol_per_sec {init: 1.15584e+20, pub: out};
var kappa_R23_pHi_NBC: fmol_per_sec {init: 6.96298e+20, pub: out};
var kappa_R34_pHi_NBC: fmol_per_sec {init: 2.70285e+20, pub: out};
var kappa_R45_pHi_NBC: fmol_per_sec {init: 1.45878e+19, pub: out};
var kappa_R56_pHi_NBC: fmol_per_sec {init: 2.48755e+19, pub: out};
var kappa_R61_pHo_NBC: fmol_per_sec {init: 1.79055e-16, pub: out};
var kappa_R12_pHo_NBC: fmol_per_sec {init: 2.70508e-16, pub: out};
var kappa_R23_pHo_NBC: fmol_per_sec {init: 1.62959e-15, pub: out};
var kappa_R34_pHo_NBC: fmol_per_sec {init: 6.32563e-16, pub: out};
var kappa_R45_pHo_NBC: fmol_per_sec {init: 3.41407e-17, pub: out};
var kappa_R56_pHo_NBC: fmol_per_sec {init: 5.82174e-17, pub: out};
var kappa_R61_NHE: fmol_per_sec {init: 2.72703e-10, pub: out};
var kappa_R12_NHE: fmol_per_sec {init: 8.07856e-12, pub: out};
var kappa_R23_NHE: fmol_per_sec {init: 0.0305301, pub: out};
var kappa_R34_NHE: fmol_per_sec {init: 3.45577e-10, pub: out};
var kappa_R45_NHE: fmol_per_sec {init: 0.00928252, pub: out};
var kappa_R56_NHE: fmol_per_sec {init: 4.57222e-12, pub: out};
var kappa_R61_pHi_NHE: fmol_per_sec {init: 1.86088e+17, pub: out};
var kappa_R12_pHi_NHE: fmol_per_sec {init: 2.63374e+17, pub: out};
var kappa_R23_pHi_NHE: fmol_per_sec {init: 6.56887e+17, pub: out};
var kappa_R34_pHi_NHE: fmol_per_sec {init: 1.05958e+18, pub: out};
var kappa_R45_pHi_NHE: fmol_per_sec {init: 4.1238e+17, pub: out};
var kappa_R56_pHi_NHE: fmol_per_sec {init: 1.80633e+17, pub: out};
var kappa_Re_B1: fmol_per_sec {init: 1.21945e-08, pub: out};
var K_HCO3_i: per_fmol {init: 0.173797, pub: out};
var K_HCO3_o: per_fmol {init: 0.344362, pub: out};
var K_Cl_i: per_fmol {init: 3.00818e-05, pub: out};
var K_Cl_o: per_fmol {init: 0.000182919, pub: out};
var K_S1_AE: per_fmol {init: 0.00536147, pub: out};
var K_S2_AE: per_fmol {init: 0.000871028, pub: out};
var K_S3_AE: per_fmol {init: 0.000793158, pub: out};
var K_S4_AE: per_fmol {init: 0.000749338, pub: out};
var K_S5_AE: per_fmol {init: 0.000682347, pub: out};
var K_S6_AE: per_fmol {init: 0.00573416, pub: out};
var K_H_i: per_fmol {init: 3.74048e+06, pub: out};
var K_H_o: per_fmol {init: 1.86796e+07, pub: out};
var K_OH_i: per_fmol {init: 0.00283707, pub: out};
var K_OH_o: per_fmol {init: 17251.5, pub: out};
var K_S1_CHE: per_fmol {init: 25.3323, pub: out};
var K_S2_CHE: per_fmol {init: 3256.68, pub: out};
var K_S3_CHE: per_fmol {init: 5424.75, pub: out};
var K_S4_CHE: per_fmol {init: 93.2005, pub: out};
var K_S5_CHE: per_fmol {init: 46.3947, pub: out};
var K_S6_CHE: per_fmol {init: 0.434702, pub: out};
var K_CO2_i: per_fmol {init: 3.17169e+12, pub: out};
var K_Na_i: per_fmol {init: 0.000964254, pub: out};
var K_Na_o: per_fmol {init: 0.00165864, pub: out};
var K_S1_NBC: per_fmol {init: 4620.34, pub: out};
var K_S2_NBC: per_fmol {init: 2900.41, pub: out};
var K_S3_NBC: per_fmol {init: 127.315, pub: out};
var K_S4_NBC: per_fmol {init: 19248.9, pub: out};
var K_S5_NBC: per_fmol {init: 43706.1, pub: out};
var K_S6_NBC: per_fmol {init: 6619.78, pub: out};
var K_S1_NHE: per_fmol {init: 4.70821e+09, pub: out};
var K_S2_NHE: per_fmol {init: 4.1237e+09, pub: out};
var K_S3_NHE: per_fmol {init: 7.5687e+08, pub: out};
var K_S4_NHE: per_fmol {init: 1.58488e+09, pub: out};
var K_S5_NHE: per_fmol {init: 4.99686e+09, pub: out};
var K_S6_NHE: per_fmol {init: 8.26036e+09, pub: out};
var K_B1: per_fmol {init: 8.271e-06, pub: out};
var K_HB1: per_fmol {init: 0.000107117, pub: out};
enddef;
def comp environment as
var t: second {pub: out};
var vol_myo: pL {init: 3.71, pub: out};
var freq: dimensionless {init: 500};
var q_HCO3_i: fmol {init: 1e-888, pub: out};
var q_HCO3_o: fmol {init: 1e-888, pub: out};
var q_Cl_i: fmol {init: 1e-888, pub: out};
var q_Cl_o: fmol {init: 1e-888, pub: out};
var q_S1_AE: fmol {init: 1e-888, pub: out};
var q_S2_AE: fmol {init: 1e-888, pub: out};
var q_S3_AE: fmol {init: 1e-888, pub: out};
var q_S4_AE: fmol {init: 1e-888, pub: out};
var q_S5_AE: fmol {init: 1e-888, pub: out};
var q_S6_AE: fmol {init: 1e-888, pub: out};
var q_H_i: fmol {init: 1e-888, pub: out};
var q_H_o: fmol {init: 1e-888, pub: out};
var q_OH_i: fmol {init: 1e-888, pub: out};
var q_OH_o: fmol {init: 1e-888, pub: out};
var q_S1_CHE: fmol {init: 1e-888, pub: out};
var q_S2_CHE: fmol {init: 1e-888, pub: out};
var q_S3_CHE: fmol {init: 1e-888, pub: out};
var q_S4_CHE: fmol {init: 1e-888, pub: out};
var q_S5_CHE: fmol {init: 1e-888, pub: out};
var q_S6_CHE: fmol {init: 1e-888, pub: out};
var q_CO2_i: fmol {init: 1e-888, pub: out};
var q_Na_i: fmol {init: 1e-888, pub: out};
var q_Na_o: fmol {init: 1e-888, pub: out};
var q_S1_NBC: fmol {init: 1e-888, pub: out};
var q_S2_NBC: fmol {init: 1e-888, pub: out};
var q_S3_NBC: fmol {init: 1e-888, pub: out};
var q_S4_NBC: fmol {init: 1e-888, pub: out};
var q_S5_NBC: fmol {init: 1e-888, pub: out};
var q_S6_NBC: fmol {init: 1e-888, pub: out};
var q_S1_NHE: fmol {init: 1e-888, pub: out};
var q_S2_NHE: fmol {init: 1e-888, pub: out};
var q_S3_NHE: fmol {init: 1e-888, pub: out};
var q_S4_NHE: fmol {init: 1e-888, pub: out};
var q_S5_NHE: fmol {init: 1e-888, pub: out};
var q_S6_NHE: fmol {init: 1e-888, pub: out};
var q_B1: fmol {init: 1e-888, pub: out};
var q_HB1: fmol {init: 1e-888, pub: out};
// AE imports
var v_R61_AE: fmol_per_sec {pub: in};
var v_R12_AE: fmol_per_sec {pub: in};
var v_R23_AE: fmol_per_sec {pub: in};
var v_R34_AE: fmol_per_sec {pub: in};
var v_R45_AE: fmol_per_sec {pub: in};
var v_R56_AE: fmol_per_sec {pub: in};
var v_R61_pHi_AE: fmol_per_sec {pub: in};
var v_R12_pHi_AE: fmol_per_sec {pub: in};
var v_R23_pHi_AE: fmol_per_sec {pub: in};
var v_R34_pHi_AE: fmol_per_sec {pub: in};
var v_R45_pHi_AE: fmol_per_sec {pub: in};
var v_R56_pHi_AE: fmol_per_sec {pub: in};
var v_R61_pHo_AE: fmol_per_sec {pub: in};
var v_R12_pHo_AE: fmol_per_sec {pub: in};
var v_R23_pHo_AE: fmol_per_sec {pub: in};
var v_R34_pHo_AE: fmol_per_sec {pub: in};
var v_R45_pHo_AE: fmol_per_sec {pub: in};
var v_R56_pHo_AE: fmol_per_sec {pub: in};
// CHE imports
var v_R61_CHE: fmol_per_sec {pub: in};
var v_R12_CHE: fmol_per_sec {pub: in};
var v_R23_CHE: fmol_per_sec {pub: in};
var v_R34_CHE: fmol_per_sec {pub: in};
var v_R45_CHE: fmol_per_sec {pub: in};
var v_R56_CHE: fmol_per_sec {pub: in};
// CO2_hyd imports
var v_Re_CO2hyd: fmol_per_sec {pub: in};
// NBC imports
var v_R61_NBC: fmol_per_sec {pub: in};
var v_R12_NBC: fmol_per_sec {pub: in};
var v_R23_NBC: fmol_per_sec {pub: in};
var v_R34_NBC: fmol_per_sec {pub: in};
var v_R45_NBC: fmol_per_sec {pub: in};
var v_R56_NBC: fmol_per_sec {pub: in};
var v_R61_pHi_NBC: fmol_per_sec {pub: in};
var v_R12_pHi_NBC: fmol_per_sec {pub: in};
var v_R23_pHi_NBC: fmol_per_sec {pub: in};
var v_R34_pHi_NBC: fmol_per_sec {pub: in};
var v_R45_pHi_NBC: fmol_per_sec {pub: in};
var v_R56_pHi_NBC: fmol_per_sec {pub: in};
var v_R61_pHo_NBC: fmol_per_sec {pub: in};
var v_R12_pHo_NBC: fmol_per_sec {pub: in};
var v_R23_pHo_NBC: fmol_per_sec {pub: in};
var v_R34_pHo_NBC: fmol_per_sec {pub: in};
var v_R45_pHo_NBC: fmol_per_sec {pub: in};
var v_R56_pHo_NBC: fmol_per_sec {pub: in};
// NHE imports
var v_R61_NHE: fmol_per_sec {pub: in};
var v_R12_NHE: fmol_per_sec {pub: in};
var v_R23_NHE: fmol_per_sec {pub: in};
var v_R34_NHE: fmol_per_sec {pub: in};
var v_R45_NHE: fmol_per_sec {pub: in};
var v_R56_NHE: fmol_per_sec {pub: in};
var v_R61_pHi_NHE: fmol_per_sec {pub: in};
var v_R12_pHi_NHE: fmol_per_sec {pub: in};
var v_R23_pHi_NHE: fmol_per_sec {pub: in};
var v_R34_pHi_NHE: fmol_per_sec {pub: in};
var v_R45_pHi_NHE: fmol_per_sec {pub: in};
var v_R56_pHi_NHE: fmol_per_sec {pub: in};
// pH_B1 imports
var v_Re_B1: fmol_per_sec {pub: in};
ode(q_HCO3_i, time) = + v_mAE + v_mCO2_hyd + v_mNBC ;
ode(q_HCO3_o, time) = + v_mAE + v_mNBC ;
ode(q_Cl_i, time) = + v_mAE + v_mCHE ;
ode(q_Cl_o, time) = + v_mAE + v_mCHE ;
ode(q_S1_AE, time) = + v_mAE ;
ode(q_S2_AE, time) = + v_mAE ;
ode(q_S3_AE, time) = + v_mAE ;
ode(q_S4_AE, time) = + v_mAE ;
ode(q_S5_AE, time) = + v_mAE ;
ode(q_S6_AE, time) = + v_mAE ;
ode(q_H_i, time) = + v_mAE + v_mCO2_hyd + v_mNBC + v_mNHE + v_mpH_B1 ;
ode(q_H_o, time) = + v_mAE + v_mNBC + v_mNHE ;
ode(q_OH_i, time) = + v_mCHE ;
ode(q_OH_o, time) = + v_mCHE ;
ode(q_S1_CHE, time) = + v_mCHE ;
ode(q_S2_CHE, time) = + v_mCHE ;
ode(q_S3_CHE, time) = + v_mCHE ;
ode(q_S4_CHE, time) = + v_mCHE ;
ode(q_S5_CHE, time) = + v_mCHE ;
ode(q_S6_CHE, time) = + v_mCHE ;
ode(q_CO2_i, time) = + v_mCO2_hyd ;
ode(q_Na_i, time) = + v_mNBC + v_mNHE ;
ode(q_Na_o, time) = + v_mNBC + v_mNHE ;
ode(q_S1_NBC, time) = + v_mNBC ;
ode(q_S2_NBC, time) = + v_mNBC ;
ode(q_S3_NBC, time) = + v_mNBC ;
ode(q_S4_NBC, time) = + v_mNBC ;
ode(q_S5_NBC, time) = + v_mNBC ;
ode(q_S6_NBC, time) = + v_mNBC ;
ode(q_S1_NHE, time) = + v_mNHE ;
ode(q_S2_NHE, time) = + v_mNHE ;
ode(q_S3_NHE, time) = + v_mNHE ;
ode(q_S4_NHE, time) = + v_mNHE ;
ode(q_S5_NHE, time) = + v_mNHE ;
ode(q_S6_NHE, time) = + v_mNHE ;
ode(q_B1, time) = + v_mpH_B1 ;
ode(q_HB1, time) = + v_mpH_B1 ;
enddef;
def map between environment and AE for
vars time and time;
vars q_HCO3_i and q_HCO3_i;
vars q_HCO3_o and q_HCO3_o;
vars q_Cl_i and q_Cl_i;
vars q_Cl_o and q_Cl_o;
vars q_S1_AE and q_S1_AE;
vars q_S2_AE and q_S2_AE;
vars q_S3_AE and q_S3_AE;
vars q_S4_AE and q_S4_AE;
vars q_S5_AE and q_S5_AE;
vars q_S6_AE and q_S6_AE;
vars q_H_i and q_H_i;
vars q_H_o and q_H_o;
vars v_R61_AE and v_R61_AE;
vars v_R12_AE and v_R12_AE;
vars v_R23_AE and v_R23_AE;
vars v_R34_AE and v_R34_AE;
vars v_R45_AE and v_R45_AE;
vars v_R56_AE and v_R56_AE;
vars v_R61_pHi_AE and v_R61_pHi_AE;
vars v_R12_pHi_AE and v_R12_pHi_AE;
vars v_R23_pHi_AE and v_R23_pHi_AE;
vars v_R34_pHi_AE and v_R34_pHi_AE;
vars v_R45_pHi_AE and v_R45_pHi_AE;
vars v_R56_pHi_AE and v_R56_pHi_AE;
vars v_R61_pHo_AE and v_R61_pHo_AE;
vars v_R12_pHo_AE and v_R12_pHo_AE;
vars v_R23_pHo_AE and v_R23_pHo_AE;
vars v_R34_pHo_AE and v_R34_pHo_AE;
vars v_R45_pHo_AE and v_R45_pHo_AE;
vars v_R56_pHo_AE and v_R56_pHo_AE;
vars q_mem and q_mem;
vars I_mem and q_mem_mAE;
enddef;
def map between environment and CHE for
vars time and time;
vars q_OH_i and q_OH_i;
vars q_OH_o and q_OH_o;
vars q_Cl_i and q_Cl_i;
vars q_Cl_o and q_Cl_o;
vars q_S1_CHE and q_S1_CHE;
vars q_S2_CHE and q_S2_CHE;
vars q_S3_CHE and q_S3_CHE;
vars q_S4_CHE and q_S4_CHE;
vars q_S5_CHE and q_S5_CHE;
vars q_S6_CHE and q_S6_CHE;
vars v_R61_CHE and v_R61_CHE;
vars v_R12_CHE and v_R12_CHE;
vars v_R23_CHE and v_R23_CHE;
vars v_R34_CHE and v_R34_CHE;
vars v_R45_CHE and v_R45_CHE;
vars v_R56_CHE and v_R56_CHE;
vars q_mem and q_mem;
vars I_mem and q_mem_mCHE;
enddef;
def map between environment and CO2_hyd for
vars time and time;
vars q_CO2_i and q_CO2_i;
vars q_HCO3_i and q_HCO3_i;
vars q_H_i and q_H_i;
vars v_Re_CO2hyd and v_Re_CO2hyd;
vars q_mem and q_mem;
vars I_mem and q_mem_mCO2_hyd;
enddef;
def map between environment and NBC for
vars time and time;
vars q_Na_i and q_Na_i;
vars q_Na_o and q_Na_o;
vars q_HCO3_i and q_HCO3_i;
vars q_HCO3_o and q_HCO3_o;
vars q_S1_NBC and q_S1_NBC;
vars q_S2_NBC and q_S2_NBC;
vars q_S3_NBC and q_S3_NBC;
vars q_S4_NBC and q_S4_NBC;
vars q_S5_NBC and q_S5_NBC;
vars q_S6_NBC and q_S6_NBC;
vars q_H_i and q_H_i;
vars q_H_o and q_H_o;
vars v_R61_NBC and v_R61_NBC;
vars v_R12_NBC and v_R12_NBC;
vars v_R23_NBC and v_R23_NBC;
vars v_R34_NBC and v_R34_NBC;
vars v_R45_NBC and v_R45_NBC;
vars v_R56_NBC and v_R56_NBC;
vars v_R61_pHi_NBC and v_R61_pHi_NBC;
vars v_R12_pHi_NBC and v_R12_pHi_NBC;
vars v_R23_pHi_NBC and v_R23_pHi_NBC;
vars v_R34_pHi_NBC and v_R34_pHi_NBC;
vars v_R45_pHi_NBC and v_R45_pHi_NBC;
vars v_R56_pHi_NBC and v_R56_pHi_NBC;
vars v_R61_pHo_NBC and v_R61_pHo_NBC;
vars v_R12_pHo_NBC and v_R12_pHo_NBC;
vars v_R23_pHo_NBC and v_R23_pHo_NBC;
vars v_R34_pHo_NBC and v_R34_pHo_NBC;
vars v_R45_pHo_NBC and v_R45_pHo_NBC;
vars v_R56_pHo_NBC and v_R56_pHo_NBC;
vars q_mem and q_mem;
vars I_mem and q_mem_mNBC;
enddef;
def map between environment and NHE for
vars time and time;
vars q_H_i and q_H_i;
vars q_H_o and q_H_o;
vars q_Na_i and q_Na_i;
vars q_Na_o and q_Na_o;
vars q_S1_NHE and q_S1_NHE;
vars q_S2_NHE and q_S2_NHE;
vars q_S3_NHE and q_S3_NHE;
vars q_S4_NHE and q_S4_NHE;
vars q_S5_NHE and q_S5_NHE;
vars q_S6_NHE and q_S6_NHE;
vars v_R61_NHE and v_R61_NHE;
vars v_R12_NHE and v_R12_NHE;
vars v_R23_NHE and v_R23_NHE;
vars v_R34_NHE and v_R34_NHE;
vars v_R45_NHE and v_R45_NHE;
vars v_R56_NHE and v_R56_NHE;
vars v_R61_pHi_NHE and v_R61_pHi_NHE;
vars v_R12_pHi_NHE and v_R12_pHi_NHE;
vars v_R23_pHi_NHE and v_R23_pHi_NHE;
vars v_R34_pHi_NHE and v_R34_pHi_NHE;
vars v_R45_pHi_NHE and v_R45_pHi_NHE;
vars v_R56_pHi_NHE and v_R56_pHi_NHE;
vars q_mem and q_mem;
vars I_mem and q_mem_mNHE;
enddef;
def map between environment and pH_B1 for
vars time and time;
vars q_H_i and q_H_i;
vars q_B1 and q_B1;
vars q_HB1 and q_HB1;
vars v_Re_B1 and v_Re_B1;
vars q_mem and q_mem;
vars I_mem and q_mem_mpH_B1;
enddef;
def map between BG_parameters and AE for
vars kappa_R61_AE and kappa_R61_AE;
vars kappa_R12_AE and kappa_R12_AE;
vars kappa_R23_AE and kappa_R23_AE;
vars kappa_R34_AE and kappa_R34_AE;
vars kappa_R45_AE and kappa_R45_AE;
vars kappa_R56_AE and kappa_R56_AE;
vars kappa_R61_pHi_AE and kappa_R61_pHi_AE;
vars kappa_R12_pHi_AE and kappa_R12_pHi_AE;
vars kappa_R23_pHi_AE and kappa_R23_pHi_AE;
vars kappa_R34_pHi_AE and kappa_R34_pHi_AE;
vars kappa_R45_pHi_AE and kappa_R45_pHi_AE;
vars kappa_R56_pHi_AE and kappa_R56_pHi_AE;
vars kappa_R61_pHo_AE and kappa_R61_pHo_AE;
vars kappa_R12_pHo_AE and kappa_R12_pHo_AE;
vars kappa_R23_pHo_AE and kappa_R23_pHo_AE;
vars kappa_R34_pHo_AE and kappa_R34_pHo_AE;
vars kappa_R45_pHo_AE and kappa_R45_pHo_AE;
vars kappa_R56_pHo_AE and kappa_R56_pHo_AE;
vars K_HCO3_i and K_HCO3_i;
vars K_HCO3_o and K_HCO3_o;
vars K_Cl_i and K_Cl_i;
vars K_Cl_o and K_Cl_o;
vars K_S1_AE and K_S1_AE;
vars K_S2_AE and K_S2_AE;
vars K_S3_AE and K_S3_AE;
vars K_S4_AE and K_S4_AE;
vars K_S5_AE and K_S5_AE;
vars K_S6_AE and K_S6_AE;
vars K_H_i and K_H_i;
vars K_H_o and K_H_o;
enddef;
def map between BG_parameters and CHE for
vars kappa_R61_CHE and kappa_R61_CHE;
vars kappa_R12_CHE and kappa_R12_CHE;
vars kappa_R23_CHE and kappa_R23_CHE;
vars kappa_R34_CHE and kappa_R34_CHE;
vars kappa_R45_CHE and kappa_R45_CHE;
vars kappa_R56_CHE and kappa_R56_CHE;
vars K_OH_i and K_OH_i;
vars K_OH_o and K_OH_o;
vars K_Cl_i and K_Cl_i;
vars K_Cl_o and K_Cl_o;
vars K_S1_CHE and K_S1_CHE;
vars K_S2_CHE and K_S2_CHE;
vars K_S3_CHE and K_S3_CHE;
vars K_S4_CHE and K_S4_CHE;
vars K_S5_CHE and K_S5_CHE;
vars K_S6_CHE and K_S6_CHE;
enddef;
def map between BG_parameters and CO2_hyd for
vars kappa_Re_CO2hyd and kappa_Re_CO2hyd;
vars K_CO2_i and K_CO2_i;
vars K_HCO3_i and K_HCO3_i;
vars K_H_i and K_H_i;
enddef;
def map between BG_parameters and NBC for
vars kappa_R61_NBC and kappa_R61_NBC;
vars kappa_R12_NBC and kappa_R12_NBC;
vars kappa_R23_NBC and kappa_R23_NBC;
vars kappa_R34_NBC and kappa_R34_NBC;
vars kappa_R45_NBC and kappa_R45_NBC;
vars kappa_R56_NBC and kappa_R56_NBC;
vars kappa_R61_pHi_NBC and kappa_R61_pHi_NBC;
vars kappa_R12_pHi_NBC and kappa_R12_pHi_NBC;
vars kappa_R23_pHi_NBC and kappa_R23_pHi_NBC;
vars kappa_R34_pHi_NBC and kappa_R34_pHi_NBC;
vars kappa_R45_pHi_NBC and kappa_R45_pHi_NBC;
vars kappa_R56_pHi_NBC and kappa_R56_pHi_NBC;
vars kappa_R61_pHo_NBC and kappa_R61_pHo_NBC;
vars kappa_R12_pHo_NBC and kappa_R12_pHo_NBC;
vars kappa_R23_pHo_NBC and kappa_R23_pHo_NBC;
vars kappa_R34_pHo_NBC and kappa_R34_pHo_NBC;
vars kappa_R45_pHo_NBC and kappa_R45_pHo_NBC;
vars kappa_R56_pHo_NBC and kappa_R56_pHo_NBC;
vars K_Na_i and K_Na_i;
vars K_Na_o and K_Na_o;
vars K_HCO3_i and K_HCO3_i;
vars K_HCO3_o and K_HCO3_o;
vars K_S1_NBC and K_S1_NBC;
vars K_S2_NBC and K_S2_NBC;
vars K_S3_NBC and K_S3_NBC;
vars K_S4_NBC and K_S4_NBC;
vars K_S5_NBC and K_S5_NBC;
vars K_S6_NBC and K_S6_NBC;
vars K_H_i and K_H_i;
vars K_H_o and K_H_o;
enddef;
def map between BG_parameters and NHE for
vars kappa_R61_NHE and kappa_R61_NHE;
vars kappa_R12_NHE and kappa_R12_NHE;
vars kappa_R23_NHE and kappa_R23_NHE;
vars kappa_R34_NHE and kappa_R34_NHE;
vars kappa_R45_NHE and kappa_R45_NHE;
vars kappa_R56_NHE and kappa_R56_NHE;
vars kappa_R61_pHi_NHE and kappa_R61_pHi_NHE;
vars kappa_R12_pHi_NHE and kappa_R12_pHi_NHE;
vars kappa_R23_pHi_NHE and kappa_R23_pHi_NHE;
vars kappa_R34_pHi_NHE and kappa_R34_pHi_NHE;
vars kappa_R45_pHi_NHE and kappa_R45_pHi_NHE;
vars kappa_R56_pHi_NHE and kappa_R56_pHi_NHE;
vars K_H_i and K_H_i;
vars K_H_o and K_H_o;
vars K_Na_i and K_Na_i;
vars K_Na_o and K_Na_o;
vars K_S1_NHE and K_S1_NHE;
vars K_S2_NHE and K_S2_NHE;
vars K_S3_NHE and K_S3_NHE;
vars K_S4_NHE and K_S4_NHE;
vars K_S5_NHE and K_S5_NHE;
vars K_S6_NHE and K_S6_NHE;
enddef;
def map between BG_parameters and pH_B1 for
vars kappa_Re_B1 and kappa_Re_B1;
vars K_H_i and K_H_i;
vars K_B1 and K_B1;
vars K_HB1 and K_HB1;
enddef;
def map between constants and AE for
vars R and R;
vars T and T;
enddef;
def map between constants and CHE for
vars R and R;
vars T and T;
enddef;
def map between constants and CO2_hyd for
vars R and R;
vars T and T;
enddef;
def map between constants and NBC for
vars R and R;
vars T and T;
enddef;
def map between constants and NHE for
vars R and R;
vars T and T;
enddef;
def map between constants and pH_B1 for
vars R and R;
vars T and T;
enddef;
enddef;
