- Author:
- WeiweiAi <wai484@aucklanduni.ac.nz>
- Date:
- 2022-07-12 17:11:03+12:00
- Desc:
- Change the stimulation protocol to double pulse with conditioning; add steady state equations
- Permanent Source URI:
- https://models.cellml.org/workspace/8af/rawfile/113b9d7fbcebee0427016d8f7d9b5b181656ab2e/Simulation/src/simFig11.py
# importing modules
import sys as sys
import os
import numpy
# Getting the name of the directory where this file is present.
current = os.path.dirname(os.path.realpath(__file__)) # src
# Getting the parent directory name where the current directory is present.
parent = os.path.dirname(current) # Simulation
# Getting the grandparent directory name
gparent = os.path.dirname(parent) # RecruitmentSynchronization_SMCs
# The path where the simExp.py is saved
mpath = gparent + '\\cellLib\\Scripts'
# appending a path
sys.path.append(mpath)
import simExp
# The simulation .sedml file
simfile = gparent+'\\Experiments\\MWC_10_test.sedml'
# Set the parameters for simulation
start, ending, pointInterval = 0, 400, 0.01
savefiles=[parent+'\\simulatedData\\simFig11_r']
indexStart = int(200/pointInterval)
indexEnd = int(ending/pointInterval) + 1
varSet = {'clamp_para/t_act':{'constants':100},'free_para_10/K':{'constants':6},'free_para_10/k_L':{'constants':0.001}
,'free_para_10/k_Lminus':{'constants':1800},'free_para_10/V0':{'constants':-40}}
varLoop = {'clamp_para/V_actTest':{'constants':numpy.array([-40])}}
varSave = {'t':{'voi':False},'output_10/dQ':{'algebraic':False},'output_10/P_o':{'algebraic':False},'output_10/Q':{'algebraic':False}}
simExp.simExp(simfile, savefiles,start, ending, pointInterval,indexStart,indexEnd,varSet,varLoop,varSave)
savefiles=[parent+'\\simulatedData\\simFig11_p']
indexStart = int(200/pointInterval)
indexEnd = int(ending/pointInterval) + 1
varSet = {'clamp_para/t_act':{'constants':100},'free_para_10/K':{'constants':6},'free_para_10/k_L':{'constants':0.005}
,'free_para_10/k_Lminus':{'constants':360},'free_para_10/V0':{'constants':-40}}
varLoop = {'clamp_para/V_actTest':{'constants':numpy.array([-63])}}
varSave = {'t':{'voi':False},'output_10/dQ':{'algebraic':False},'output_10/P_o':{'algebraic':False},'output_10/Q':{'algebraic':False}}
simExp.simExp(simfile, savefiles,start, ending, pointInterval,indexStart,indexEnd,varSet,varLoop,varSave)
